OHIF zero-footprint DICOM viewer and oncology specific Lesion Tracker, plus shared extension packages
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SimpleITK: a layer built on top of the Insight Toolkit (ITK), intended to simplify and facilitate ITK's use in rapid prototyping, education and interpreted languages.
Plant phenotyping with image analysis
Ruby wrapper around pHash, the perceptual hash library for detecting duplicate multimedia files
An elegant Python interface for visualization on the web platform to interactively generate insights into multidimensional images, point sets, and geometry.
Spatial Single Cell Analysis in Python
Tools for computational pathology
Image quality is an open source software library for Image Quality Assessment (IQA).
TrackMate is your buddy for your everyday tracking.
Automated 3D cell detection in very large images
Cancer Imaging Phenomics Toolkit (CaPTk) is a software platform to perform image analysis and predictive modeling tasks. Documentation: https://cbica.github.io/CaPTk
Collection of tools and scripts useful to automate microscopy workflows in ZEN Blue using Python and Open Application Development tools and AI tools.
Open-source software for exploring and analyzing large, high-dimensional image-derived data.
Python package for image-based profiling
Collection of mathematical morphology methods and plugins for ImageJ
A curated list of awesome cytodata resources https://www.cytodata.org/awesome-cytodata/
Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy
NeuroAnatomy Toolbox: An R package for the (3D) visualisation and analysis of biological image data, especially tracings of single neurons.
:art: Image processing toolbox for R
HistoClean is a tool for the preprocessing and augmentation of images used in deep learning models. This easy to use application brings together the most popular image processing packages from across the python universe, meaning no more looking at documentation! HistoClean provides real time feedback to augmentations and preprocessing options. This allows users to evaluate their steps before implementation.
Plugins for bone image analysis
Lattice light-sheet post-processing utility.
Imagej macro to calculate the MTF based on a knife edge measurement
Modular image and object analysis workflows for ImageJ/Fiji