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OHIF zero-footprint DICOM viewer and oncology specific Lesion Tracker, plus shared extension packages
StarDist - Object Detection with Star-convex Shapes
TorchXRayVision: A library of chest X-ray datasets and models. Classifiers, segmentation, and autoencoders.
⚡High Performance DICOM Medical Image Parser in Go.
SimpleITK: a layer built on top of the Insight Toolkit (ITK), intended to simplify and facilitate ITK's use in rapid prototyping, education and interpreted languages.
Plant phenotyping with image analysis
Segment Anything for Microscopy
Ruby wrapper around pHash, the perceptual hash library for detecting duplicate multimedia files
An elegant Python interface for visualization on the web platform to interactively generate insights into multidimensional images, point sets, and geometry.
Spatial Single Cell Analysis in Python
Vision-Language Pathology Foundation Model - Nature Medicine
Code for the Nature Scientific Reports paper "Pathologist-level classification of histologic patterns on resected lung adenocarcinoma slides with deep neural networks." A sliding window framework for classification of high resolution whole-slide images, often microscopy or histopathology images.
Tools for computational pathology
Image quality is an open source software library for Image Quality Assessment (IQA).
TrackMate is your buddy for your everyday tracking.
Automated 3D cell detection in very large images
Cancer Imaging Phenomics Toolkit (CaPTk) is a software platform to perform image analysis and predictive modeling tasks. Documentation: https://cbica.github.io/CaPTk
AI-based pathology predicts origins for cancers of unknown primary - Nature
Collection of tools and scripts useful to automate microscopy workflows in ZEN Blue using Python and Open Application Development tools and AI tools.
Open-source software for exploring and analyzing large, high-dimensional image-derived data.
Python package for image-based profiling
A tool for cell instance aware segmentation in densely packed 3D volumetric images
Collection of mathematical morphology methods and plugins for ImageJ