SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.
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Official repository for the ProteinGym benchmarks
- benchmark
- computational-biology
- protein
- protein-design
Native R and Python sample-deletion robustness for omics: candidate certificates, minimum deletion bounds, Bioconductor model refits and donor-level pseudobulk
- bioinformatics
- exact-optimization
- metabolomics
- paired-data
Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.
Predicting Cell Health with Morphological Profiles
- carpenter-lab
- morphological-profiling
- crispr
- cell-painting
XitoSBML - the spatial SBML plugin for ImageJ
- sbml
- systems-biology
- spatial-sbml-plugin
- imagej