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Neo4j Spatial is a library of utilities for Neo4j that faciliates the enabling of spatial operations on data. In particular you can add spatial indexes to already located data, and perform spatial operations on the data like searching for data within specified regions or within a specified distance of a point of interest.
Canonical GTFS Validator project for schedule (static) files.
The core OneBusAway application suite.
A Java-based library for reading, writing, and transforming public transit data in the GTFS format, including database support.
Libraries and tools for working with transit data conforming to the VDV specification.
Produce GTFS-realtime data from a SIRI data source.
A Java application that takes a GTFS file and produces a Barefoot map file