Repository Index

Deciphering cell-cell communication from spatially resolved transcriptomic data at single-cell resolution with subgraph-based attentional graph neural network

Using a Kalman Filter to interpolate bus position based on periodic measurements

Sources for the Network Science Cheatsheets

Various examples of notebooks for working with web archives with the Archives Unleashed Toolkit, and derivatives generated by the Archives Unleashed Toolkit.

• notebooks
• pyspark-notebook
• juypter-notebook
• spark

Exploring the space of drug combinations to discover synergistic drugs using Active Learning

American Sign Language Detection is a deep learning end to end project where we can detect American Sign Language.

• asl
• keras
• tensroflow
• tflite

Signal generators ( AD9833, AD9834, AD9850, ADF4351) tools box.

• ad9833
• ad9834
• ad9850
• adf4351

Compiles Transportation Speed and Ridership Data

A multi-language tokenizer for extracting identifiers from source code.

Implementation of "Adversarial Frontier Stitching for Remote Neural Network Watermarking" in TensorFlow.

• tensorflow
• tensorflow2
• watermarking
• neural-network

A GTFS-based data transit network data standard suitable for dynamic transit modeling.

Attempt at reproducing a SGNN's projection layer, but with word n-grams instead of skip-grams. Paper and more: http://aclweb.org/anthology/D18-1105

A coding exercise: let's convert dirty machine learning code into clean code using a Pipeline - which is the Pipe and Filter Design Pattern applied to Machine Learning.

Graviton: verify your TEAL program by experiment and observation

• algorand
• avm
• blockchain
• pyteal

Slides and materials for various talks I've given

:snake: Python Implementation for KITTI Scan Unfolding

• kitti
• python
• scan-unfolding
• projection

Visualization Tool for GTFS-RT Bus Delays

• gtfs-rt
• transit
• transit-delays
• transit-network

Investigating multilingual language models (BERT) by using them for NER in German and English

Human Protein Atlas image classification competition

UV-first benchmark for protein-ligand docking with reproducible annotation, pocket similarity, and HPC workflows.

• benchmark
• bioinformatics
• cheminformatics
• computational-chemistry

:game_die: Neutrino research

• physics
• neutrino
• neutrino-oscillations

Clock generators ( Si5351 for now ) toolbox.

• si5351
• ft232h
• micropython
• esp32

GTFS Data Pipeline for TfNSW Bus Datasets

• gtfs
• gtfs-static
• gtfs-realtime
• tfnsw

Single Image Random Dot Stereogram for Tensorflow

• tensorflow
• jupyter-notebook
• 3d-reconstruction
• stereogram-creator