Repository Index

Reference mapping for single-cell genomics

• single-cell
• deep-learning
• rna-seq-analysis
• data-integration

Presentations from H2O meetups & conferences by the H2O.ai team

• h2o
• presentations
• meetups
• h2oai

The fast Continuous Wavelet Transform (fCWT) is a library for fast calculation of CWT.

• cwt
• matlab
• cpp
• optimization

Genomic Pretrained Network - GPN, GPN-MSA, PhyloGPN, GPN-Star

• dna
• language-model
• variant-effect-prediction
• genomics

TranslatedLearning machine learning and quantitative analysis, in progress

Implementation of various topic models

Deep Reinforcement Learning for de-novo Drug Design

• deeplearning
• reinforcement-learning
• cheminformatics
• molecular-modeling

Jupyter's kernel for Elixir programming language

• elixir
• jupyter
• jupyter-kernels
• repl

Tensorflow implementation of "Learning Deep Features for Discriminative Localization"

Fusing Histology and Genomics via Deep Learning - IEEE TMI

• pathomic
• fusion
• multimodal
• pathology

The repository host gives no description.

An OCaml kernel for Jupyter (IPython) notebook

• ocaml
• functional-programming
• jupyter-kernels
• machine-learning

Every day, millions of traders around the world are trying to make money by trading stocks. These days, physical traders are also being replaced by automated trading robots. Algorithmic trading market has experienced significant growth rate and large number of firms are using it. I have tried to build a Deep Q-learning reinforcement agent model to do automated stock trading.

A tensorflow implementation of an HMM layer

• tensorflow
• tensorflow-hmm
• viterbi
• hmm

TranslatedLLM teaching material for high school students: based on Karpathy's microgpt, for Google Colab

Pan-Cancer Integrative Histology-Genomic Analysis via Multimodal Deep Learning - Cancer Cell

• histology
• wsi-images
• pan-cancer-analysis
• genomics

MolTrans: Molecular Interaction Transformer for Drug Target Interaction Prediction (Bioinformatics)

Open source remote sensing dataset with benchmarks

Urban Informatics and Visualization (UC Berkeley CP255)

Materials for GWU DNSC 6279 and DNSC 6290.

• data-science
• data-mining
• data-visualization
• machine-learning

Python for chemoinformatics

• chemoinformatics
• scikit-learn
• cheminformatics
• python

This trading-gym is the first trading for agent to train with episode of short term trading itself.

scikit-learn wrappers for Python fastText.

This is the code for "Bitcoin Prediction" by Siraj Raval on Youtube