Repository Index

Introduction to Statistics using Python

FarmVibes.AI: Multi-Modal GeoSpatial ML Models for Agriculture and Sustainability

• agriculture
• ai
• geospatial
• geospatial-analytics

Precision Medicine Knowledge Graph (PrimeKG)

• knowledge-graph
• precision-medicine
• therapeutics
• bioinformatics

Segment Anything for Microscopy

• microscopy-images
• segment-anything
• segmentation
• cell-segmentation

A library of metrics for evaluating recommender systems

The repository host gives no description.

Full tutorial of computer vision and machine learning basics with OpenCV and Keras in Python.

Reference mapping for single-cell genomics

• single-cell
• deep-learning
• rna-seq-analysis
• data-integration

Genomic Pretrained Network - GPN, GPN-MSA, PhyloGPN, GPN-Star

• dna
• language-model
• variant-effect-prediction
• genomics

Deep Reinforcement Learning for de-novo Drug Design

• deeplearning
• reinforcement-learning
• cheminformatics
• molecular-modeling

Fusing Histology and Genomics via Deep Learning - IEEE TMI

• pathomic
• fusion
• multimodal
• pathology

Pan-Cancer Integrative Histology-Genomic Analysis via Multimodal Deep Learning - Cancer Cell

• histology
• wsi-images
• pan-cancer-analysis
• genomics

MolTrans: Molecular Interaction Transformer for Drug Target Interaction Prediction (Bioinformatics)

Urban Informatics and Visualization (UC Berkeley CP255)

Python for chemoinformatics

• chemoinformatics
• scikit-learn
• cheminformatics
• python

scPerturb: A resource and a python/R tool for single-cell perturbation data

• cite-seq
• database
• perturbation
• scatac-seq

Repository for Nicheformer: a foundation model for single-cell and spatial omics

Code for "Predicting Cellular Responses to Novel Drug Perturbations at a Single-Cell Resolution", NeurIPS 2022.

• disentanglement
• drug-discovery
• genomics
• perturbation

Quantitative Economics

General Modeling Network Specification

• network
• specification
• highway-network
• road-network

Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.

Cyber Defence Monitoring Course Suite :: Suricata, Arkime (and others in the past)

• moloch
• suricata
• monitoring
• nsm

AuShadha (औषध): Means medicine in Sanskrit. This is a Electronic Medical Records (EMR) and Public Health Management for small clinics written in Django and Dojo

Peax is a tool for interactive visual pattern search and exploration in epigenomic data based on unsupervised representation learning with autoencoders

• epigenomics
• pattern-search
• data-visualization
• interactive-machine-learning