Repository Index

🍇 GRAPE is a Rust/Python Graph Representation Learning library for Predictions and Evaluations

• graph
• high-performance
• machine-learning
• knowledge-graph

Cleora AI is a general-purpose open-source model for efficient, scalable learning of stable and inductive entity embeddings for heterogeneous relational data. Created by Synerise.com team.

• ai
• graphs
• synerise
• embeddings

Solve captcha without manually labeling a training set

• keras
• gan
• neural-network
• generative-adversarial-network

A scikit-learn-compatible Python implementation of ReBATE, a suite of Relief-based feature selection algorithms for Machine Learning.

• feature-selection
• data-science
• python

Reference mapping for single-cell genomics

• single-cell
• deep-learning
• rna-seq-analysis
• data-integration

The fast Continuous Wavelet Transform (fCWT) is a library for fast calculation of CWT.

• cwt
• matlab
• cpp
• optimization

Genomic Pretrained Network - GPN, GPN-MSA, PhyloGPN, GPN-Star

• dna
• language-model
• variant-effect-prediction
• genomics

Fusing Histology and Genomics via Deep Learning - IEEE TMI

• pathomic
• fusion
• multimodal
• pathology

TranslatedLLM teaching material for high school students: based on Karpathy's microgpt, for Google Colab

Pan-Cancer Integrative Histology-Genomic Analysis via Multimodal Deep Learning - Cancer Cell

• histology
• wsi-images
• pan-cancer-analysis
• genomics

scPerturb: A resource and a python/R tool for single-cell perturbation data

• cite-seq
• database
• perturbation
• scatac-seq

Repository for Nicheformer: a foundation model for single-cell and spatial omics

🏃 The go-to single-cell Foundation Model

• batch-correction
• cell-biology
• celltype-annotation
• denoising

Code for "Predicting Cellular Responses to Novel Drug Perturbations at a Single-Cell Resolution", NeurIPS 2022.

• disentanglement
• drug-discovery
• genomics
• perturbation

InferPy: Deep Probabilistic Modeling with Tensorflow Made Easy

• probabilistic-programming
• neural-network
• tensorflow
• keras-tensorflow

The repository host gives no description.

The repository host gives no description.

Integrated pipeline for multiplexed image analysis

• multiplexed-imaging
• python

This repository is to create tflite models for the available ocr models

PRnet is a flexible and scalable perturbation-conditioned generative model predicting transcriptional responses to unseen complex perturbations at bulk and single-cell levels.

A database of paths that represent the mechanism of action from a drug to a disease in an indication.

• ncats-translator

Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications

• cell-annotation
• multiplexed-imaging
• mpif

Jupyterlab extension to show notebook cell completion notifications

• jupyter
• jupyterlab
• browser-notifications
• jupyterlab-extension

High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations