Repository Index

python partial dependence plot toolbox

A simple Python data-structure visualization tool for lists of lists, lists, dictionaries; primarily for use in Jupyter notebooks / presentations

Pathology Foundation Model - Nature Medicine

• foundation
• foundation-model
• histopathology
• mahmoodlab

Data Hacking Project

A scikit-learn-compatible Python implementation of ReBATE, a suite of Relief-based feature selection algorithms for Machine Learning.

• feature-selection
• data-science
• python

Urban Informatics and Visualization (UC Berkeley CP255)

Materials for GWU DNSC 6279 and DNSC 6290.

• data-science
• data-mining
• data-visualization
• machine-learning

Usiigaci: stain-free cell tracking in phase contrast microscopy enabled by supervised machine learning

• tensorflow
• python3
• keras
• resnet-101

Optimising chemical reactions using machine learning

• chemistry
• machine-learning
• optimization
• bayesian-optimization

REVISE: A Tool for Measuring and Mitigating Bias in Visual Datasets --- https://arxiv.org/abs/2004.07999

Cyber Defence Monitoring Course Suite :: Suricata, Arkime (and others in the past)

• moloch
• suricata
• monitoring
• nsm

daru-view is for easy and interactive plotting in web application & IRuby notebook. daru-view is a plugin gem to the existing daru gem.

• daru
• daru-view
• data-visualization
• plot-library

A database of paths that represent the mechanism of action from a drug to a disease in an indication.

• ncats-translator

Peax is a tool for interactive visual pattern search and exploration in epigenomic data based on unsupervised representation learning with autoencoders

• epigenomics
• pattern-search
• data-visualization
• interactive-machine-learning

Repository for paper scMulan: a multitask generative pre-trained language model for single-cell analysis.

• foundation-models
• gpt
• single-cell

Tools for drawing 2d and 3d interactive visualizations using Jupyter proxy widgets

The repository host gives no description.

Deciphering cell-cell communication from spatially resolved transcriptomic data at single-cell resolution with subgraph-based attentional graph neural network

Using a Kalman Filter to interpolate bus position based on periodic measurements

Various examples of notebooks for working with web archives with the Archives Unleashed Toolkit, and derivatives generated by the Archives Unleashed Toolkit.

• notebooks
• pyspark-notebook
• juypter-notebook
• spark

A GTFS-based data transit network data standard suitable for dynamic transit modeling.

CNN, Caffe, LaMem,Azure

Visualization Tool for GTFS-RT Bus Delays

• gtfs-rt
• transit
• transit-delays
• transit-network

Tools to support transit service analysis.