Repository Index

Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.

REVISE: A Tool for Measuring and Mitigating Bias in Visual Datasets --- https://arxiv.org/abs/2004.07999

tutorials made for biologists to learn deep learning

• biologists
• keras
• deeplearning
• deep-learning

Cyber Defence Monitoring Course Suite :: Suricata, Arkime (and others in the past)

• moloch
• suricata
• monitoring
• nsm

TranslatedA tiny Transformer built from scratch in PyTorch, with an English-to-Chinese translation demo | A small Transformer implemented from scratch with PyTorch, with an English-to-Chinese translation demo, to help understand how the model works

• attention-mechanism
• deep-learning
• educational
• from-scratch

Compilado de recursos sobre Computação Quântica em português

daru-view is for easy and interactive plotting in web application & IRuby notebook. daru-view is a plugin gem to the existing daru gem.

• daru
• daru-view
• data-visualization
• plot-library

Detecting cancers on mobile phones

Docker container for Kafka - Spark Streaming - Cassandra

PRnet is a flexible and scalable perturbation-conditioned generative model predicting transcriptional responses to unseen complex perturbations at bulk and single-cell levels.

Big Data essentials: Hadoop, MapReduce, Spark. Explore tutorials and demos in Jupyter notebooks—most are self-contained and live, ready to run with a click.

• big-data
• bigdata
• spark
• spark-sql

Generate random crop fields for Ignition Gazebo

BulkFormer: A large-scale foundation model for human bulk transcriptomes

a nose plugin for finding and running IPython notebooks as nose tests

A database of paths that represent the mechanism of action from a drug to a disease in an indication.

• ncats-translator

How to create Selfie2Anime from tflite model to Android.

• tensorflow-lite
• selfie2anime
• gans
• android

AuShadha (औषध): Means medicine in Sanskrit. This is a Electronic Medical Records (EMR) and Public Health Management for small clinics written in Django and Dojo

Code repository for The Automation Ahead series, showcasing practical examples for GenAI-driven automation in investments. Each installment dives into specific tools, techniques, and use cases to help professionals assess and apply GenAI effectively.

• data-science
• deep-learning
• finance
• financial-data

SplineDist: Automated Cell Segmentation with Spline Curves

Peax is a tool for interactive visual pattern search and exploration in epigenomic data based on unsupervised representation learning with autoencoders

• epigenomics
• pattern-search
• data-visualization
• interactive-machine-learning

Various Jupyter notebooks about Common Crawl data

• jupyter-notebook
• common-crawl
• aws-athena
• webarchiving

Research experiments exploring uncommon quant techniques.

• analysis
• jupyter-notebook
• python
• quant

Exercises for the lecture "Selected Topics in Audio Signal Processing"

Simple demo of filtering signal with an LPF and plotting its Short-Time Fourier Transform (STFT) and Laplace transform, in Python.

• stft
• hanning-window
• laplace-transform
• fft