Repository Index

Urban Informatics and Visualization (UC Berkeley CP255)

This repository contains notebooks that show the usage of TensorFlow Lite for quantizing deep neural networks.

• tensorflow-2
• tensorflow-lite
• on-device-ml
• model-quantization

🏃 The go-to single-cell Foundation Model

• batch-correction
• cell-biology
• celltype-annotation
• denoising

Optimising chemical reactions using machine learning

• chemistry
• machine-learning
• optimization
• bayesian-optimization

InferPy: Deep Probabilistic Modeling with Tensorflow Made Easy

• probabilistic-programming
• neural-network
• tensorflow
• keras-tensorflow

General Modeling Network Specification

• network
• specification
• highway-network
• road-network

Integrated pipeline for multiplexed image analysis

• multiplexed-imaging
• python

Cyber Defence Monitoring Course Suite :: Suricata, Arkime (and others in the past)

• moloch
• suricata
• monitoring
• nsm

Docker container for Kafka - Spark Streaming - Cassandra

Big Data essentials: Hadoop, MapReduce, Spark. Explore tutorials and demos in Jupyter notebooks—most are self-contained and live, ready to run with a click.

• big-data
• bigdata
• spark
• spark-sql

Various Jupyter notebooks about Common Crawl data

• jupyter-notebook
• common-crawl
• aws-athena
• webarchiving

Deep learning model for single-cell inference of multi-omic profiles from a single input modality.

• single-cell
• scrna-seq
• scatac-seq
• deep-neural-networks

Sample code for Core ML using ResNet50 provided by Apple and a custom model generated by coremltools.

• ios
• coreml
• coreml-framework
• swift

The repository host gives no description.

Deciphering cell-cell communication from spatially resolved transcriptomic data at single-cell resolution with subgraph-based attentional graph neural network

Sources for the Network Science Cheatsheets

Various examples of notebooks for working with web archives with the Archives Unleashed Toolkit, and derivatives generated by the Archives Unleashed Toolkit.

• notebooks
• pyspark-notebook
• juypter-notebook
• spark

Implementation of "Adversarial Frontier Stitching for Remote Neural Network Watermarking" in TensorFlow.

• tensorflow
• tensorflow2
• watermarking
• neural-network

A GTFS-based data transit network data standard suitable for dynamic transit modeling.

Attempt at reproducing a SGNN's projection layer, but with word n-grams instead of skip-grams. Paper and more: http://aclweb.org/anthology/D18-1105

Slides and materials for various talks I've given

The repository host gives no description.

Visualization Tool for GTFS-RT Bus Delays

• gtfs-rt
• transit
• transit-delays
• transit-network

UV-first benchmark for protein-ligand docking with reproducible annotation, pocket similarity, and HPC workflows.

• benchmark
• bioinformatics
• cheminformatics
• computational-chemistry