Repository Index

A TensorFlow implementation of the Mnemonic Descent Method.

• tensorflow
• menpo
• face
• face-alignment

Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.

REVISE: A Tool for Measuring and Mitigating Bias in Visual Datasets --- https://arxiv.org/abs/2004.07999

PRnet is a flexible and scalable perturbation-conditioned generative model predicting transcriptional responses to unseen complex perturbations at bulk and single-cell levels.

Big Data essentials: Hadoop, MapReduce, Spark. Explore tutorials and demos in Jupyter notebooks—most are self-contained and live, ready to run with a click.

• big-data
• bigdata
• spark
• spark-sql

A database of paths that represent the mechanism of action from a drug to a disease in an indication.

• ncats-translator

Code repository for The Automation Ahead series, showcasing practical examples for GenAI-driven automation in investments. Each installment dives into specific tools, techniques, and use cases to help professionals assess and apply GenAI effectively.

• data-science
• deep-learning
• finance
• financial-data

Peax is a tool for interactive visual pattern search and exploration in epigenomic data based on unsupervised representation learning with autoencoders

• epigenomics
• pattern-search
• data-visualization
• interactive-machine-learning

Exercises for the lecture "Selected Topics in Audio Signal Processing"

Simple demo of filtering signal with an LPF and plotting its Short-Time Fourier Transform (STFT) and Laplace transform, in Python.

• stft
• hanning-window
• laplace-transform
• fft

Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications

• cell-annotation
• multiplexed-imaging
• mpif

Repository for paper scMulan: a multitask generative pre-trained language model for single-cell analysis.

• foundation-models
• gpt
• single-cell

Classification and Gradient-based Localization of Chest Radiographs using PyTorch.

• fine-tuning
• vgg16
• resnet18
• densenet121

High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations

Tools for drawing 2d and 3d interactive visualizations using Jupyter proxy widgets

Deep learning model for single-cell inference of multi-omic profiles from a single input modality.

• single-cell
• scrna-seq
• scatac-seq
• deep-neural-networks

Mobile Deep Learning Projects, published by Packt

Sample code for Core ML using ResNet50 provided by Apple and a custom model generated by coremltools.

• ios
• coreml
• coreml-framework
• swift

The repository host gives no description.

Agentic LLM CTF to test prompt injection attacks and preventions

This is the github repository for converting craft pretrained model to tflite version

A simple data project for Steam data

• steam
• steam-data
• steam-api
• python

American Sign Language Detection is a deep learning end to end project where we can detect American Sign Language.

• asl
• keras
• tensroflow
• tflite

Attempt at reproducing a SGNN's projection layer, but with word n-grams instead of skip-grams. Paper and more: http://aclweb.org/anthology/D18-1105