Repository Index

tutorials made for biologists to learn deep learning

• biologists
• keras
• deeplearning
• deep-learning

TranslatedA tiny Transformer built from scratch in PyTorch, with an English-to-Chinese translation demo | A small Transformer implemented from scratch with PyTorch, with an English-to-Chinese translation demo, to help understand how the model works

• attention-mechanism
• deep-learning
• educational
• from-scratch

A database of paths that represent the mechanism of action from a drug to a disease in an indication.

• ncats-translator

Code repository for The Automation Ahead series, showcasing practical examples for GenAI-driven automation in investments. Each installment dives into specific tools, techniques, and use cases to help professionals assess and apply GenAI effectively.

• data-science
• deep-learning
• finance
• financial-data

Peax is a tool for interactive visual pattern search and exploration in epigenomic data based on unsupervised representation learning with autoencoders

• epigenomics
• pattern-search
• data-visualization
• interactive-machine-learning

Repository for paper scMulan: a multitask generative pre-trained language model for single-cell analysis.

• foundation-models
• gpt
• single-cell

Classification and Gradient-based Localization of Chest Radiographs using PyTorch.

• fine-tuning
• vgg16
• resnet18
• densenet121

Deep learning model for single-cell inference of multi-omic profiles from a single input modality.

• single-cell
• scrna-seq
• scatac-seq
• deep-neural-networks

Mobile Deep Learning Projects, published by Packt

Sample code for Core ML using ResNet50 provided by Apple and a custom model generated by coremltools.

• ios
• coreml
• coreml-framework
• swift

The repository host gives no description.

This is the github repository for converting craft pretrained model to tflite version

Deciphering cell-cell communication from spatially resolved transcriptomic data at single-cell resolution with subgraph-based attentional graph neural network

American Sign Language Detection is a deep learning end to end project where we can detect American Sign Language.

• asl
• keras
• tensroflow
• tflite

Attempt at reproducing a SGNN's projection layer, but with word n-grams instead of skip-grams. Paper and more: http://aclweb.org/anthology/D18-1105

UV-first benchmark for protein-ligand docking with reproducible annotation, pocket similarity, and HPC workflows.

• benchmark
• bioinformatics
• cheminformatics
• computational-chemistry

An Icon classifier made with TFLite Model Maker and deployed to Android with ML Model Binding.

• tensorflow-lite
• tflite
• computer-vision
• deep-learning

Better Python Stacktraces with power of AI.