Repository Index

Fusing Histology and Genomics via Deep Learning - IEEE TMI

• pathomic
• fusion
• multimodal
• pathology

Every day, millions of traders around the world are trying to make money by trading stocks. These days, physical traders are also being replaced by automated trading robots. Algorithmic trading market has experienced significant growth rate and large number of firms are using it. I have tried to build a Deep Q-learning reinforcement agent model to do automated stock trading.

Pan-Cancer Integrative Histology-Genomic Analysis via Multimodal Deep Learning - Cancer Cell

• histology
• wsi-images
• pan-cancer-analysis
• genomics

This trading-gym is the first trading for agent to train with episode of short term trading itself.

An enhanced interactive Shell for Common Lisp (based on the Jupyter protocol)

This repository is a collection of TTS Models in TFLite

Wrapper for RDKit's RunReactants to improve stereochemistry handling

scPerturb: A resource and a python/R tool for single-cell perturbation data

• cite-seq
• database
• perturbation
• scatac-seq

Breaking captchas using torch

Repository for Nicheformer: a foundation model for single-cell and spatial omics

This repository contains notebooks that show the usage of TensorFlow Lite for quantizing deep neural networks.

• tensorflow-2
• tensorflow-lite
• on-device-ml
• model-quantization

A python Two Source Energy Balance model for estimation of evapotranspiration with remote sensing data

• source-energy-balance
• canopy
• soil
• radiometric-temperatures

An interactive Quiz generator for Jupyter notebooks and Jupyter Book

• quiz
• jupyter-notebook
• jupyter-notebooks
• interactive

🏃 The go-to single-cell Foundation Model

• batch-correction
• cell-biology
• celltype-annotation
• denoising

Code for "Predicting Cellular Responses to Novel Drug Perturbations at a Single-Cell Resolution", NeurIPS 2022.

• disentanglement
• drug-discovery
• genomics
• perturbation

⬛ Python Individual Conditional Expectation Plot Toolbox

• machine-learning
• interpretability

Tools for pen plotting in Python

A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design

• protein
• protein-sequences
• protein-design
• representation-learning

This project aims to classify human activities using data obtained from accelerometer and gyroscope sensors from phone and watch.

How to create a Cartoonizer Android app with TensorFlow Lite models.

• tensorflow-lite
• tflite
• computer-vision
• gans

This repository is to create tflite models for the available ocr models

REVISE: A Tool for Measuring and Mitigating Bias in Visual Datasets --- https://arxiv.org/abs/2004.07999

tutorials made for biologists to learn deep learning

• biologists
• keras
• deeplearning
• deep-learning

Cyber Defence Monitoring Course Suite :: Suricata, Arkime (and others in the past)

• moloch
• suricata
• monitoring
• nsm