Repository Index

🏃 The go-to single-cell Foundation Model

• batch-correction
• cell-biology
• celltype-annotation
• denoising

TranslatedA tiny Transformer built from scratch in PyTorch, with an English-to-Chinese translation demo | A small Transformer implemented from scratch with PyTorch, with an English-to-Chinese translation demo, to help understand how the model works

• attention-mechanism
• deep-learning
• educational
• from-scratch

Peax is a tool for interactive visual pattern search and exploration in epigenomic data based on unsupervised representation learning with autoencoders

• epigenomics
• pattern-search
• data-visualization
• interactive-machine-learning

Various Jupyter notebooks about Common Crawl data

• jupyter-notebook
• common-crawl
• aws-athena
• webarchiving

Research experiments exploring uncommon quant techniques.

• analysis
• jupyter-notebook
• python
• quant

Exercises for the lecture "Selected Topics in Audio Signal Processing"

Classification and Gradient-based Localization of Chest Radiographs using PyTorch.

• fine-tuning
• vgg16
• resnet18
• densenet121

open source E-book on statistical physics

• statistical-physics
• statistical-mechanics

Sources for the Network Science Cheatsheets

Various examples of notebooks for working with web archives with the Archives Unleashed Toolkit, and derivatives generated by the Archives Unleashed Toolkit.

• notebooks
• pyspark-notebook
• juypter-notebook
• spark

Exploring the space of drug combinations to discover synergistic drugs using Active Learning

A multi-language tokenizer for extracting identifiers from source code.

A coding exercise: let's convert dirty machine learning code into clean code using a Pipeline - which is the Pipe and Filter Design Pattern applied to Machine Learning.

Tools to support transit service analysis.

:game_die: Neutrino research

• physics
• neutrino
• neutrino-oscillations