Repository Index

daru-view is for easy and interactive plotting in web application & IRuby notebook. daru-view is a plugin gem to the existing daru gem.

• daru
• daru-view
• data-visualization
• plot-library

PRnet is a flexible and scalable perturbation-conditioned generative model predicting transcriptional responses to unseen complex perturbations at bulk and single-cell levels.

Big Data essentials: Hadoop, MapReduce, Spark. Explore tutorials and demos in Jupyter notebooks—most are self-contained and live, ready to run with a click.

• big-data
• bigdata
• spark
• spark-sql

BulkFormer: A large-scale foundation model for human bulk transcriptomes

A database of paths that represent the mechanism of action from a drug to a disease in an indication.

• ncats-translator

How to create Selfie2Anime from tflite model to Android.

• tensorflow-lite
• selfie2anime
• gans
• android

Code repository for The Automation Ahead series, showcasing practical examples for GenAI-driven automation in investments. Each installment dives into specific tools, techniques, and use cases to help professionals assess and apply GenAI effectively.

• data-science
• deep-learning
• finance
• financial-data

SplineDist: Automated Cell Segmentation with Spline Curves

Peax is a tool for interactive visual pattern search and exploration in epigenomic data based on unsupervised representation learning with autoencoders

• epigenomics
• pattern-search
• data-visualization
• interactive-machine-learning

Exercises for the lecture "Selected Topics in Audio Signal Processing"

Repository for paper scMulan: a multitask generative pre-trained language model for single-cell analysis.

• foundation-models
• gpt
• single-cell

Cell and line magic for PGF/TikZ-to-SVG rendering in Jupyter notebooks

• jupyter
• latex
• tikz
• tikz-figures

Jupyterlab extension to show notebook cell completion notifications

• jupyter
• jupyterlab
• browser-notifications
• jupyterlab-extension

Classification and Gradient-based Localization of Chest Radiographs using PyTorch.

• fine-tuning
• vgg16
• resnet18
• densenet121

The repository host gives no description.

Tools for drawing 2d and 3d interactive visualizations using Jupyter proxy widgets

Sample code for Core ML using ResNet50 provided by Apple and a custom model generated by coremltools.

• ios
• coreml
• coreml-framework
• swift

The repository host gives no description.

Agentic LLM CTF to test prompt injection attacks and preventions

This is the github repository for converting craft pretrained model to tflite version

CancerFoundation: A single-cell RNA sequencing foundation model to decipher drug resistance in cancer

• cancer
• foundation-model
• single-cell

Deciphering cell-cell communication from spatially resolved transcriptomic data at single-cell resolution with subgraph-based attentional graph neural network

Using a Kalman Filter to interpolate bus position based on periodic measurements

Various examples of notebooks for working with web archives with the Archives Unleashed Toolkit, and derivatives generated by the Archives Unleashed Toolkit.

• notebooks
• pyspark-notebook
• juypter-notebook
• spark