Making Protein folding accessible to all!
- bioinformatics
- multiple-sequence-alignment
- protein-structure
- structure-prediction
Repository Index
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The Classiq Library is the largest collection of quantum algorithms and applications. It is the best way to explore quantum computing software. We welcome community contributions to our Library 🙌
- quantum-algorithms
- quantum-software
- quantum-applications
- quantum-open-source
A PyTorch library entirely dedicated to neural differential equations, implicit models and related numerical methods
- deep-learning
- neural-network
- neural-differential-equations
- pytorch
This repo is created to serve simulaion and analysis on the data collected in Jiuyang Bai's dissertation research.
Differentiable, Hardware Accelerated, Molecular Dynamics
Aircraft design optimization made fast through computational graph transformations (e.g., automatic differentiation). Composable analysis tools for aerodynamics, propulsion, structures, trajectory design, and much more.
- aerodynamics
- airplane
- cfd
- mdo
Welcome to the Physics-based Deep Learning Book v0.3 - the GenAI Edition
- deep-learning
- numerical-simulations
- pde-solvers
- artificial-intelligence
Notebooks for financial economics. Keywords: Jupyter notebook pandas Federal Reserve FRED Ferbus GDP CPI PCE inflation unemployment wage income debt Case-Shiller housing asset portfolio equities SPX bonds TIPS rates currency FX euro EUR USD JPY yen XAU gold Brent WTI oil Holt-Winters time-series forecasting statistics econometrics
- jupyter-notebook
- pandas
- federal-reserve
- gdp
A Deep Learning Toolkit for DTI, Drug Property, PPI, DDI, Protein Function Prediction (Bioinformatics)
- drug-repurposing
- deep-learning
- drug-target-interactions
- toolkit
WebGL accelerated JavaScript molecular graphics library
- molecular-graphics
- molecular-modeling
- computational-biology
- computational-chemistry
Foundation Models for Genomics & Transcriptomics
Pathology Foundation Model - Nature Medicine
- foundation
- foundation-model
- histopathology
- mahmoodlab
Deep Reinforcement Learning for de-novo Drug Design
- deeplearning
- reinforcement-learning
- cheminformatics
- molecular-modeling
MolTrans: Molecular Interaction Transformer for Drug Target Interaction Prediction (Bioinformatics)
Pan-Cancer Integrative Histology-Genomic Analysis via Multimodal Deep Learning - Cancer Cell
- histology
- wsi-images
- pan-cancer-analysis
- genomics
Wrapper for RDKit's RunReactants to improve stereochemistry handling
scPerturb: A resource and a python/R tool for single-cell perturbation data
- cite-seq
- database
- perturbation
- scatac-seq
🏃 The go-to single-cell Foundation Model
- batch-correction
- cell-biology
- celltype-annotation
- denoising
Code for "Predicting Cellular Responses to Novel Drug Perturbations at a Single-Cell Resolution", NeurIPS 2022.
- disentanglement
- drug-discovery
- genomics
- perturbation
A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design
- protein
- protein-sequences
- protein-design
- representation-learning
Integrated pipeline for multiplexed image analysis
- multiplexed-imaging
- python
Peax is a tool for interactive visual pattern search and exploration in epigenomic data based on unsupervised representation learning with autoencoders
- epigenomics
- pattern-search
- data-visualization
- interactive-machine-learning
Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications
- cell-annotation
- multiplexed-imaging
- mpif
High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations