Repository Index

Bayesian optimization in PyTorch

The repository host gives no description.

• foundation-model
• gpt
• single-cell

WebGL accelerated JavaScript molecular graphics library

• molecular-graphics
• molecular-modeling
• computational-biology
• computational-chemistry

Foundation Models for Genomics & Transcriptomics

• genomics
• deep-learning
• transformer
• dna

The fast Continuous Wavelet Transform (fCWT) is a library for fast calculation of CWT.

• cwt
• matlab
• cpp
• optimization

The repository host gives no description.

Optimising chemical reactions using machine learning

• chemistry
• machine-learning
• optimization
• bayesian-optimization

The repository host gives no description.

PRnet is a flexible and scalable perturbation-conditioned generative model predicting transcriptional responses to unseen complex perturbations at bulk and single-cell levels.

BulkFormer: A large-scale foundation model for human bulk transcriptomes

Research experiments exploring uncommon quant techniques.

• analysis
• jupyter-notebook
• python
• quant

Repository for paper scMulan: a multitask generative pre-trained language model for single-cell analysis.

• foundation-models
• gpt
• single-cell

Deciphering cell-cell communication from spatially resolved transcriptomic data at single-cell resolution with subgraph-based attentional graph neural network