Repository Index

This open-source curriculum introduces the fundamentals of Model Context Protocol (MCP) through real-world, cross-language examples in .NET, Java, TypeScript, JavaScript, Rust and Python. Designed for developers, it focuses on practical techniques for building modular, scalable, and secure AI workflows from session setup to service orchestration.

• csharp
• java
• javascript
• mcp

State-of-the-Art Deep Learning scripts organized by models - easy to train and deploy with reproducible accuracy and performance on enterprise-grade infrastructure.

• computer-vision
• deep-learning
• drug-discovery
• forecasting

WebGL accelerated JavaScript molecular graphics library

• molecular-graphics
• molecular-modeling
• computational-biology
• computational-chemistry

Foundation Models for Genomics & Transcriptomics

• genomics
• deep-learning
• transformer
• dna

Slides, scripts and materials for the Machine Learning in Finance Course at NYU Tandon, 2022

• coursework
• fraud-detection
• introduction-to-machine-learning
• machine-learning

Fusing Histology and Genomics via Deep Learning - IEEE TMI

• pathomic
• fusion
• multimodal
• pathology

PRnet is a flexible and scalable perturbation-conditioned generative model predicting transcriptional responses to unseen complex perturbations at bulk and single-cell levels.

BulkFormer: A large-scale foundation model for human bulk transcriptomes

Deciphering cell-cell communication from spatially resolved transcriptomic data at single-cell resolution with subgraph-based attentional graph neural network