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Turn DeepSeek Harness into a self-hosted enterprise Agent platform with knowledge, deep research, content generation, vibe coding, browser automation, governance, and admin controls.

Code for the Nature Scientific Reports paper "Pathologist-level classification of histologic patterns on resected lung adenocarcinoma slides with deep neural networks." A sliding window framework for classification of high resolution whole-slide images, often microscopy or histopathology images.

  • histopathology-images
  • microscopy
  • sliding-windows
  • medical-image-analysis

A Python native dynamical system simulation framework in the block diagram paradigm.

  • blockdiagram
  • control-systems
  • hierarchical-modeling
  • nonlinear-dynamics

Malcolm is a powerful, easily deployable network traffic analysis tool suite for full packet capture artifacts (PCAP files), Zeek logs and Suricata alerts.

Limon is a sandbox developed as a research project written in python, which automatically collects, analyzes, and reports on the run time indicators of Linux malware. It allows one to inspect Linux malware before execution, during execution, and after execution (post-mortem analysis) by performing static, dynamic and memory analysis using open source tools

Power rename/refactor tool for CLI and agent use

  • python
  • renames
  • regular-expression
  • refactoring

FOREST is a research agent for long-horizon science, where evidence gets lost, errors compound, and goals drift. It explores ideas, reads literature, forms hypotheses, runs real experiments, analyzes results, revises paths, and builds a full paper—all in an editable graph you can inspect, branch, redirect, with claims and figures linked to evidence

  • ai-agents
  • ai-scientist
  • automated-research
  • autoresearch

An agent that compiles git maintenance chores into reusable programs, then decides whether to replay them by running checks rather than by guessing the task looks familiar

  • agent-architecture
  • git-automation
  • llm-agents
  • program-synthesis