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Friendly Environment for Neural Networks (fenn) is a simple Python framework for building ML/DL workflows and LLM agents faster, with prebuilt trainers, agent templates, logging, configuration management, and much more.

PyTorch implementation of the MIDAS algorithm for single-cell multimodal data integration (Nature Biotechnology 2024).

  • deep-generative-model
  • deep-learning
  • single-cell-data-integration
  • single-cell-multiomics

Multi-stage Riemannian flow matching for physically valid molecular docking, with GNINA scoring, PoseBusters filtering, CLI inference, and benchmarks.

  • alphafold3
  • docking
  • drug-design
  • drug-discovery

HistoClean is a tool for the preprocessing and augmentation of images used in deep learning models. This easy to use application brings together the most popular image processing packages from across the python universe, meaning no more looking at documentation! HistoClean provides real time feedback to augmentations and preprocessing options. This allows users to evaluate their steps before implementation.