Repository Index

Simultaneous Nuclear Instance Segmentation and Classification in H&E Histology Images.

A set of useful perceptually uniform colormaps for plotting scientific data

• holoviz
• colorcet
• colormaps
• matplotlib

HaboMalHunter is a sub-project of Habo Malware Analysis System (https://habo.qq.com), which can be used for automated malware analysis and security assessment on the Linux system.

• malware-analysis
• dynamic-analysis
• security
• linux

Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different domains of protein biology.

• deep-learning
• protein-sequences
• protein-structure
• semi-supervised-learning

Remory: Learning Residual Memory for Context Compaction

• context-compaction
• inference
• llm-agents
• residual-memory

[ICRA] Crowd-aware Robot Navigation

• reinforcement-learning
• crowd-navigation
• collision-avoidance

User-oriented Web UI browser tests in Python

• automation
• e2e-testing
• python
• selene

ROS package for dynamic obstacle avoidance for ground robots trained with deep RL

• tensorflow
• ros
• deep-reinforcement-learning
• collision-avoidance

Tamper-evident tracing, policy gates and cross-checks for AI agents: see what the agent did, and why.

• agent-security
• ai-agents
• audit-log
• claude-code

🚀 Useful README.md, LICENSE, CONTRIBUTING.md, CODE_OF_CONDUCT.md, SECURITY.md, GitHub Issues, Pull Requests and Actions templates to jumpstart your projects.

• readme
• documentation
• docs
• docs-generator

The last Micro Web Server for IoTs (MicroPython) or large servers (CPython), that supports WebSockets, routes, template engine and with really optimized architecture (mem allocations, async I/Os). Ready for ESP32, STM32 on Pyboard, Pycom's chipsets (WiPy, LoPy, ...). Robust, efficient and documented!

• websockets
• micropython
• esp32
• microwebsrv

A curated list of Monte Carlo tree search papers with implementations.

• tree-search
• learning
• machine-learning
• deep-learning

AI-first external attack surface assessment with continuous discovery, evidence-based vulnerability validation, and developer-agent MCP integration.

• ai
• attack-surface-management
• bbot
• cybersecurity

Experimental Darling runtime patches and tools for testing the macOS League client on Linux

Awesome REA (Reverse Engineer Anything): curated AI reverse engineering cases. What AI agents (REA, Craft Anything, Claude Code, Codex) reverse-engineered and rebuilt, open-source alternatives by app, and which ones really used REA. Unofficial, bilingual, every case checked.

• ai-agents
• awesome
• awesome-list
• claude-code

A unified framework for building, evaluating, and recursively improving embodied agents. 🚀 Code release coming soon.

AI drew your research figure. Tavotto makes it publication-ready: edit matplotlib and AI-generated figures on a canvas, lay out multi-panel pages in mm, check journal rules before export. Scripts stay untouched.

• academic-publishing
• ai-tools
• claude-code
• codex

Pysolr — Python Solr client

• python
• solr
• solr-client
• solr-search

TranslatedSprix AI at 屿智同行 (Yuzhi Tongxing, "island wisdom traveling together") × 保研岛 (Baoyan Dao, "Baoyan Island") — an open-source benchmark for AI agents in Baoyan advising and application planning.

Python SMART on FHIR client

• fhir-client
• fhir-parser
• fhir
• smart-on-fhir

The Agentic Scientist: Orchestrating Coding Agents for Automated Scientific (Co-)Discovery

Requirements management using version control.

• requirements-management
• version-control
• documentation
• traceability

Official Hi3D v1.0: high-resolution 3D geometry refinement built on Sparc3D. Inference code, model weights, and documentation.

• 3d-generation
• image-to-3d
• geometry-refinement
• sparc3d

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