Spectrogram calculation for NumPy
- signal-processing
- audio-analysis
- stft
- fft
Repository Index
47,133 repositories indexed
265–288 of 302 · Most stars
MCP server for spatial transcriptomics analysis through natural language interfaces.
- bioinformatics
- cell-communication
- deconvolution
- machine-learning
Cryptographic Dataset Generation & Modelling Framework
Tool for segmentation in bioimaging
- napari
- bioimage-analysis
Turn CSV, Excel, and read-only databases into verified, editable business reports.
- data-visualization
- self-hosted
- sql
- text-to-sql
A foundation model-driven whole slide image-scale cell phenotyping method with QuPath integration Resources
- bioimage-analysis
- cell-classification
- computer-vision
- digital-pathology
Create n-grams of wordlists based on words, characters, or charsets to use in offline password attacks and data analysis
- hashcat
- jtr
- mdxfind
- ngram
pytest plugin to test mypy static type analysis
- pytest-plugin
- mypy
HistoClean is a tool for the preprocessing and augmentation of images used in deep learning models. This easy to use application brings together the most popular image processing packages from across the python universe, meaning no more looking at documentation! HistoClean provides real time feedback to augmentations and preprocessing options. This allows users to evaluate their steps before implementation.
- image-processing
- images
- image-analysis
- deep-learning
3D shape analysis using deep learning
- cancer-biology
- cell-biology
- deep-learning
- geometric-deep-learning
Quanfima (Quantitative Analysis of Fibrous Materials)
- data-analysis
- material-science
- volumetric-data
- morphological-analysis
Lattice light-sheet post-processing utility.
- microscopy
- light-sheet
- image-processing
- image-analysis
Packing detection tool for PE files
- detector
- pe-file
- pe-format
- peid
A native and unofficial implementation of p0f3 in Python with extra analysis features: It's p0f3+!
Single-cell fluorescence microscopy data analysis
- microscopy
- fluorescence-microscopy-imaging
Universal 1d/2d data containers with Transformers functionality for data analysis.
Library for interacting through the SPI protocol with an 'Analog Devices ADXL345' accelerometer from an MCU flashed with MicroPython. Methods are optimised for trying to reach max available sampling rate for this device
- micropython
- micropython-esp32
- esp32
- accelerometer
Python tools for the corpus analysis of popular music.
Claude Code stock analysis skill: SEC EDGAR + market data, /analyze /score /compare — free, local Python tools. By XVARY Research.
- claude-code
- stock-analysis
- ai-skills
- anthropic
Code evolution analysis for Git repositories
- git
- python
- tree-sitter
- software-evolution
scPair: Boosting single cell multimodal analysis by leveraging single cell atlases and implicit feature selection
🛡️ Static security scanner (SAST) for Ansible playbooks, roles, and collections. 1,000+ rules across 30+ categories detecting malicious code, RCE, hardcoded credentials, and supply-chain risk. Outputs SARIF, CycloneDX SBOM, and GitLab SAST. SLSA Build Level 3, Sigstore-signed.
- ansible
- ansible-playbook
- devsecops
- infrastructure-as-code
Package for running linters, formatters, static type checkers, and code analysis tools on python code in quarto (.qmd) files.
A Python library built on pandas and geopandas for linearly referenced data management, engineering, and analysis using the DataFrame accessor pattern (.lr).
- asset-management
- data-science
- engineering
- geospatial