A full spaCy pipeline and models for scientific/biomedical documents.
- scientific-documents
- spacy
- custom-pipes
- nlp
Repository Index
69,734 visible repositories in the index
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BirdNET analyzer for scientific audio data processing.
- bioacoustics
- birds
- birdsong
- acoustic-monitoring
Implementation of DiffDock: Diffusion Steps, Twists, and Turns for Molecular Docking
- diffusion-models
- docking
- binding
- computational-biology
Biological foundation modeling from molecular to genome scale
StarDist - Object Detection with Star-convex Shapes
- bioimage-analysis
- cell-segmentation
- nuclei-segmentation
- object-detection
Brian is a free, open source simulator for spiking neural networks.
- python
- neuroscience
- science
- differential-equations
🦖 ClawBio - The first bioinformatics-native AI agent skill library. Local-first. Reproducible. Open. Free.
- ai-agents
- bioinformatics
- equity
- genomics
An open-source application for biological image analysis
Cloud-native genomic dataframes and batch computing
- genetics
- vcf
- genomics
- gwas
Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis
Plant phenotyping with image analysis
- science
- bioinformatics
- image-analysis
- plant-phenotyping
Python package for graph neural networks in chemistry and biology
- deep-learning
- graph-neural-networks
- dgl
- cheminformatics
In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more
- dna
- k-mer
- python
- bloom-filter
A PyTorch and TorchDrug based deep learning library for drug pair scoring. (KDD 2022)
- deep-learning
- pytorch
- deep-chemistry
- graph-neural-network
OpenChem: Deep Learning toolkit for Computational Chemistry and Drug Design Research
Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different domains of protein biology.
- deep-learning
- protein-sequences
- protein-structure
- semi-supervised-learning
Chainer Chemistry: A Library for Deep Learning in Biology and Chemistry
Interactive network visualization in Python and Dash, powered by Cytoscape.js
- plotly-dash
- plotly
- dash
- cytoscape
Generative biopolymer design with rich conditioning.
Vision-Language Pathology Foundation Model - Nature Medicine
- bioimage-analysis
- bioimage-informatics
- conch
- foundation-model
The repository host gives no description.
Graph-linked unified embedding for single-cell multi-omics data integration
- bioinformatics
- deep-learning
- single-cell
- single-cell-multiomics
Deep Learning Library for Single Cell Analysis
- deep-learning
- tensorflow
- instance-segmentation
- cell-biology
Tools for computational pathology
- machine-learning
- digital-pathology
- computational-pathology
- biomedical-image-processing