Axon/Myelin segmentation using Deep Learning
- deep-learning
- machine-learning
- myelin
- axon
Repository Index
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The python-microscopy environment - an open-source package for light microscopy
Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy
- biology
- fluorescence
- image-analysis
- image-processing
python functions for simulating optical transfer functions
- microscopy
- numpy
Your own clipboard in the cloud, copy and paste text with gist between systems !!
Gaussian processes and Bayesian optimization for images and hyperspectral data
- image-processing
- hyperspectral-images
- gaussian-processes
- bayesian-optimization
Pure Python library for reading NIS Elements ND2 images and metadata
- nd2
- pims
- nikon
- nis-elements
ZetaStitcher is a tool designed to stitch large volumetric images such as those produced by Light-Sheet Fluorescence Microscopes.
- stitching
- microscopy
- microscopy-images
- fluorescence-microscopy-imaging
A foundation model-driven whole slide image-scale cell phenotyping method with QuPath integration Resources
- bioimage-analysis
- cell-classification
- computer-vision
- digital-pathology
Python3 script that transfers files in Google Colab 10-50x faster, using multi-threaded parallel copying between Google Drive locations.
- colab-notebook
- multithreading
- parallel-computing
- copy
Lattice light-sheet post-processing utility.
- microscopy
- light-sheet
- image-processing
- image-analysis
Noise Correction Algorithm for sCMOS cameras
- cmos
- imaging
- noise
- readout
Single-cell fluorescence microscopy data analysis
- microscopy
- fluorescence-microscopy-imaging
An interactive image processing program for biologists written in Python.
- biologists
- python
- imagej
- calcium
Accurate segmentation of bacterial microscope images using deep learning synthetically generated image data.
- microscopy
- image-processing
- segmentation
- biology
Inserts commented open source software licenses into source code.
- developer-tools
- development-utility
- development-workflow
- development
A python package to analyze the matrix fiber orientation and intensity around cells in fiber matrices (as a proxy for cellular forces).
- imaging
- microscopy
- contractility
- collagen
Copy a pandas DataFrame to the clipboard with one click
[DEPRECATED] A package for storing morphological profiling data.
🔬Python package for high-throughput single-cell imaging analysis.
- microscopy-image-analysis
- single-cell-analysis
X Audio Copy - GTK and GNOME application for ripping CD-Audio and encoding in lossy and lossless audio formats.
Panoptic segmentation algorithms for 2D and 3D electron microscopy images
- deep-learning
- semantic-segmentation
- segmentation
- pytorch
Python library for statistical analysis of mRNA and protein distributions in fluorescent microscopy images