Repository Index

Noise Correction Algorithm for sCMOS cameras

• cmos
• imaging
• noise
• readout

Single-cell fluorescence microscopy data analysis

• microscopy
• fluorescence-microscopy-imaging

An interactive image processing program for biologists written in Python.

• biologists
• python
• imagej
• calcium

Accurate segmentation of bacterial microscope images using deep learning synthetically generated image data.

• microscopy
• image-processing
• segmentation
• biology

A python package to analyze the matrix fiber orientation and intensity around cells in fiber matrices (as a proxy for cellular forces).

• imaging
• microscopy
• contractility
• collagen

[DEPRECATED] A package for storing morphological profiling data.

• profiling
• microscopy
• database

🔬Python package for high-throughput single-cell imaging analysis.

• microscopy-image-analysis
• single-cell-analysis

Panoptic segmentation algorithms for 2D and 3D electron microscopy images

• deep-learning
• semantic-segmentation
• segmentation
• pytorch

Python library for statistical analysis of mRNA and protein distributions in fluorescent microscopy images