Repository Index

Python asyncio ping library

Toolbox for the analysis of smFISH images.

• pattern-classification
• rna-localization
• segmentation
• smfish

TypeDB Bio: Biomedical Knowledge Graph

• bioinformatics
• knowledge-graph
• knowledge-base
• drug-discovery

A graph reliability toolbox based on PyTorch and PyTorch Geometric (PyG).

• adversarial-attacks
• graph-convolutional-networks
• graph-neural-networks
• pytorch

Open framework for calculating spatial urban sprawl indices and performing disaggregated population estimates using open data

• openstreetmap
• overpass-api
• urban-planning
• urban-sprawl

Micropython driver for HX711 24-Bit Analog-to-Digital Converter

System monitoring program for Raspberry pi single board computers written in Python 3.

• raspberry-pi
• raspberry-pi-3
• raspberrypi
• raspberry

🐳 Dockerized SSH bastion to proxy SSH connections to arbitrary containers.

• kubernetes
• ssh-server
• ssh-tunnel
• gateway

RootPainter: Deep Learning Segmentation of Biological Images with Corrective Annotation

• biological-images
• root
• painter
• segmentation

A reusable Django app that sends metrics about your project to InfluxDB

Vulnerable Web applications Generator

• vulnerabilities
• docker
• python
• generator

Sample staging & detonation utility to be used in combination with Cuckoo Sandbox.

Real-Time Spherical Array Renderer for binaural reproduction in Python

• python
• signal-processing
• binauralaudio
• 3d-audio

🧙 meiga is a Python µframework that provides a simple, fully typed, monad-based result type ➡️ Result[Value, Error].

• monads
• result-type
• typing
• python

NeoDTI: Neural integration of neighbor information from a heterogeneous network for discovering new drug-target interactions

• computational-biology
• bioinformatics
• graph-convolution
• deep-learning

A Flask CLI extension to help migrate and manage your SQL database.

• sqlalchemy
• alembic
• flask
• database

PyTorch implementation of the MIDAS algorithm for single-cell multimodal data integration (Nature Biotechnology 2024).

• deep-generative-model
• deep-learning
• single-cell-data-integration
• single-cell-multiomics

Jinja2 templating system bindings for the Pyramid web framework

Realistic synthetic events for testing, demos, and pipelines — streamed live or generated in bulk

• clickhouse
• data-engineering
• data-generation
• devops

A package to simulate, filter, and estimate DSGE models with occasionally binding constraints

📚 Only Cite what you can verify

• arxiv
• bibliography
• bibtex
• citation

Docker image gathering packers and tools for making datasets of packed executables and training machine learning models for packing detection

• docker-image
• executable-packing
• malware-packers
• research-platform

Simple way to use an nRF24L01 radio to exchange arbitrary Python objects between two Pyboards

• micropython
• protocol
• radio
• embedded

Autonomous multi-agent framework to optimize scientific software

• acceleration
• agentic-ai
• ai-agents
• bioinformatics