MCP server for spatial transcriptomics analysis through natural language interfaces.
- bioinformatics
- cell-communication
- deconvolution
- machine-learning
Repository Index
47,133 repositories indexed
481–504 of 545 · Most stars
An interactive command-line InfluxDB cli with auto completion.
- influxdb
- cli
- developer-tools
- autocomplete
A foundation model-driven whole slide image-scale cell phenotyping method with QuPath integration Resources
- bioimage-analysis
- cell-classification
- computer-vision
- digital-pathology
Multi-stage Riemannian flow matching for physically valid molecular docking, with GNINA scoring, PoseBusters filtering, CLI inference, and benchmarks.
- alphafold3
- docking
- drug-design
- drug-discovery
Converts John The Ripper/Cain format hashes (singular, or in bulk) to HashCat compatible hash format.
- hashcat
- ntlmv1-hashcat
- hash-formats
- ntlmv2
Git IPFS Remote Bridge
Python3 script that transfers files in Google Colab 10-50x faster, using multi-threaded parallel copying between Google Drive locations.
- colab-notebook
- multithreading
- parallel-computing
- copy
Create self-extracting compressed or self-mounting archives for MicroPython
WebLogic Honeypot is a low interaction honeypot to detect CVE-2017-10271 in the Oracle WebLogic Server component of Oracle Fusion Middleware. This is a Remote Code Execution vulnerability.
- security
- security-tools
- honeypot
- deception
Claude Code marketplace for multi-agent collaboration — task splitter, output reconciler, adversarial debate, shared memory, acceptance gate. Composes with codex-delegate / gemini-delegate.
- agent-collaboration
- ai-agents
- claude-code
- claude-skills
AutoIt through WebDriver or a webdriver-compatible server for AutoIt
Course materials for Zurich Initiative for Computational Economics (ZICE) 2014
Python library that implements DVB protocols for companion synchronisation
- dvb
- dvb-css
- media-synchronisation
- python
Minimal async captive portal for MicroPython (compatible with uasyncio v3/MicroPython 1.13+ as well as earlier versions)
- micropython
- captive-portal
MicroPython LoRa EBYTE E220 LLCC68 device library complete and tested with Arduino, esp8266, esp32, STM32 and Raspberry Pi Pico (rp2040 boards).
- arduino
- arduino-samd-boards
- e220
- ebyte
A complete, reliable, secure and open source webapp based on zero-knowledge encryption to deal with TOTP
- totp
- webapp
- zero-knowledge-encryption
Fast, deterministic cell-type deconvolution for million-bin spatial transcriptomics
- bioinformatics
- cell-type-deconvolution
- computational-biology
- deconvolution
Persistent decision memory for AI agents: rationale, rejected approaches, and entity history. Connect any compatible agent through local MCP or the CLI.
- agent-memory
- agent-trace
- ai-agent-reasoning
- ai-agents
A repo-native coding-agent loop harness for Claude, Codex, Copilot, and other CLI agents. Agents can edit. Gates decide what lands. You set the plan in motion. The agents take a prompt, and each iteration must update specs and commit through guardrails.
Capture The Flag competition challenge write-ups
- ctf
- ctf-writeups
- ctf-solutions
- writeup
Measuring synchronisation timing accuracy for DVB Compainion Screen Synchronisation TVs and Companions
- hbbtv2
- dvbcss
- dvb-protocols
- dvb-css
A buzzer implmention for micropython that can play nokia compose and midi files
Tool for suggesting lemma names in Coq verification projects
- coq
- machine-learning
- name-generation
- pytorch
Trust metadata for AI agents — a stamp costs ~15 tokens, re-verifying costs 15,000. Agents stamp what they verify; the next agent runs 'akf check' and builds on it. pip install akf