In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more
- dna
- k-mer
- python
- bloom-filter
Repository Index
57,637 visible repositories in the index
649–672 of 983 · Most stars
DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genome
- kmer
- dnabert-model
- kmer-format
- gpu
:scissors: High performance, multi-threaded image scraper
A machine learning tool that ranks strings based on their relevance for malware analysis.
- machine-learning
- fireeye-flare
- strings
- malware-analysis
Simultaneous Nuclear Instance Segmentation and Classification in H&E Histology Images.
HaboMalHunter is a sub-project of Habo Malware Analysis System (https://habo.qq.com), which can be used for automated malware analysis and security assessment on the Linux system.
- malware-analysis
- dynamic-analysis
- security
- linux
Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different domains of protein biology.
- deep-learning
- protein-sequences
- protein-structure
- semi-supervised-learning
[ICRA] Crowd-aware Robot Navigation
- reinforcement-learning
- crowd-navigation
- collision-avoidance
ROS package for dynamic obstacle avoidance for ground robots trained with deep RL
- tensorflow
- ros
- deep-reinforcement-learning
- collision-avoidance
Little Ball of Fur - A graph sampling extension library for NetworKit and NetworkX (CIKM 2020)
- graph
- graph-sampling
- network-sampling
- random-walk
AI-first external attack surface assessment with continuous discovery, evidence-based vulnerability validation, and developer-agent MCP integration.
- ai
- attack-surface-management
- bbot
- cybersecurity
Sequence learning toolkit for Python
Generation of protein sequences and evolutionary alignments via discrete diffusion models
- discrete-diffusion
- generative-model
- multiple-sequence-alignment
- protein-sequences
pyspark methods to enhance developer productivity 📣 👯 🎉
Official Hi3D v1.0: high-resolution 3D geometry refinement built on Sparc3D. Inference code, model weights, and documentation.
- 3d-generation
- image-to-3d
- geometry-refinement
- sparc3d
A Python package to visualise neuroanatomical data in atlas space
- neuroscience
- python
- anatomy
- visualization
Interactive network visualization in Python and Dash, powered by Cytoscape.js
- plotly-dash
- plotly
- dash
- cytoscape
Remory: Learning Residual Memory for Context Compaction
- context-compaction
- inference
- llm-agents
- residual-memory
Pandas, Polars, Spark, and Snowpark DataFrame comparison for humans and more!
Tool to gather Threat Intelligence indicators from publicly available sources
Trading-R1: Agentic Finance Research
CRM and Task management software, Email marketing and many more. Django CRM software app is built for individual use by businesses of any size or freelancers and is designed to provide easy customization and quick development. ✨
- crm-system
- crm
- sales
- email-marketing
FiPy is a Finite Volume PDE solver written in Python
- scientific-computing
- scientific-computing-with-python
- phase-field
- materials-science
Tamper-evident tracing, policy gates and cross-checks for AI agents: see what the agent did, and why.
- agent-security
- ai-agents
- audit-log
- claude-code