Read and write Neuroglancer datasets programmatically.
- neuroglancer
- volumetric-data
- python
- cloud
Repository Index
47,133 repositories indexed
49–72 of 72 · Most stars
A collection of tools for painting super-resolution images
- microscopy
- super-resolution
- smlm
- dna-paint
A tool for cell instance aware segmentation in densely packed 3D volumetric images
- segmentation
- deep-learning
- bioinformatics
- neural-network
:whale: Keep an eye on your docker image size and prevent it from growing too big
- docker
- docker-images
- docker-linter
- python3
Command line utility and Python package to ease the (un)mounting of forensic disk images
Produce watertight polygonal vector maps by tracing raster images
acquire is a tool to quickly gather forensic artifacts from disk images or a live system into a lightweight container.
An open-source imaging workbench for making and studying SDR and HDR images from sensor data
Toolbox for the analysis of smFISH images.
- pattern-classification
- rna-localization
- segmentation
- smfish
RootPainter: Deep Learning Segmentation of Biological Images with Corrective Annotation
- biological-images
- root
- painter
- segmentation
Gaussian processes and Bayesian optimization for images and hyperspectral data
- image-processing
- hyperspectral-images
- gaussian-processes
- bayesian-optimization
Pure Python library for reading NIS Elements ND2 images and metadata
- nd2
- pims
- nikon
- nis-elements
ZetaStitcher is a tool designed to stitch large volumetric images such as those produced by Light-Sheet Fluorescence Microscopes.
- stitching
- microscopy
- microscopy-images
- fluorescence-microscopy-imaging
Network Extraction From Images
A lightweight, zero-dependency TUI dashboard for managing Docker containers and images dynamically in the terminal.
- dashboard
- developer-tools
- docker
- monitoring
HistoClean is a tool for the preprocessing and augmentation of images used in deep learning models. This easy to use application brings together the most popular image processing packages from across the python universe, meaning no more looking at documentation! HistoClean provides real time feedback to augmentations and preprocessing options. This allows users to evaluate their steps before implementation.
- image-processing
- images
- image-analysis
- deep-learning
Accurate segmentation of bacterial microscope images using deep learning synthetically generated image data.
- microscopy
- image-processing
- segmentation
- biology
mrQA: tools for quality assurance in medical imaging datasets, including protocol compliance
- qa
- mri
- neuroimaging
- niqc
Grid-like images/gifs for Pinned Gists
- crop-image
- github-readme
- profile
- pinned-gist
Panoptic segmentation algorithms for 2D and 3D electron microscopy images
- deep-learning
- semantic-segmentation
- segmentation
- pytorch
Python library for statistical analysis of mRNA and protein distributions in fluorescent microscopy images
Python toolkit for discovering, monitoring, and controlling Tasmota devices via MQTT with CLI utilities and ready-to-use multi-arch Docker images
- automation
- cli
- control
- device-management
Showing alternative hosting to the traditional Golem main server for GVMI images
- golem
- skynet
Generates images in bulk from image inputs.
- golem