Repository Index

Codebase for "A Foundation Model for Cell Segmentation"

基于 PatchCore 的工业异常检测项目，研究 layer2/layer3 分数融合、敏感性引导收缩与风险受控门控，并提供 Streamlit 工程化 Demo。

• anomaly-detection
• computer-vision
• feature-fusion
• industrial-anomaly-detection

Cell tracking and segmentation software

• cell-segmentation
• cell-tracking
• cell-tracking-challenge
• gurobi

A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data

PyTorch Connectomics: segmentation toolbox for EM connectomics

• computer-vision
• neuroscience
• connectomics
• pytorch

Medical LLM agent and MRI segmentation workspace built on PharmaLLM, with LangGraph, vLLM, and BEU-Net.

A tool for cell instance aware segmentation in densely packed 3D volumetric images

• segmentation
• deep-learning
• bioinformatics
• neural-network

Axon/Myelin segmentation using Deep Learning

• deep-learning
• machine-learning
• myelin
• axon

Agent skill: outline, mask and count objects in photos with Meta's SAM 3 on your own NVIDIA GPU, with review, exports and a viewer. Works with Claude Code, Codex, Cursor, Pi and other Agent Skills clients.

• agent-skills
• annotation
• claude-code
• claude-code-plugin

Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy

• biology
• fluorescence
• image-analysis
• image-processing

Toolbox for the analysis of smFISH images.

• pattern-classification
• rna-localization
• segmentation
• smfish

RootPainter: Deep Learning Segmentation of Biological Images with Corrective Annotation

• biological-images
• root
• painter
• segmentation

Tool for segmentation in bioimaging

• napari
• bioimage-analysis

Accurate segmentation of bacterial microscope images using deep learning synthetically generated image data.

• microscopy
• image-processing
• segmentation
• biology

Panoptic segmentation algorithms for 2D and 3D electron microscopy images

• deep-learning
• semantic-segmentation
• segmentation
• pytorch

Using a U-Net for image segmentation, blending predicted patches smoothly is a must to please the human eye.