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allRank is a framework for training learning-to-rank neural models based on PyTorch.

  • learning-to-rank
  • ndcg
  • ranking
  • information-retrieval

DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genome

  • kmer
  • dnabert-model
  • kmer-format
  • gpu

A computer, compiled into the weights of a language model. An exact CPU inside Qwen3.5-4B, with Gated DeltaNet state as RAM.

  • gated-deltanet
  • interpretability
  • llm
  • qwen

CellViT: Vision Transformers for Precise Cell Segmentation and Classification

  • ai
  • cell
  • digitalpathology
  • microscopy

This is a Pytorch implementation of the paper: Self-Supervised Graph Transformer on Large-Scale Molecular Data

[ECCV 2026] Official implementation of "HRDiT: Training-Free High-Resolution Image Generation with Off-the-Shelf Diffusion Transformer Models"

TransformerCPI: Improving compound–protein interaction prediction by sequence-based deep learning with self-attention mechanism and label reversal experiments(BIOINFORMATICS 2020) https://doi.org/10.1093/bioinformatics/btaa524

  • self-attention
  • compound-protein-interaction
  • transformercpi
  • structure-free-virtual-sreening

Code and data for the paper "Evaluating German Transformer Language Models with Syntactic Agreement Tests" (Zaczynska et al., 2020)

A minimalistic codebase for training NLG models from HuggingFace Transformers using PyTorch Lightning.

  • bart
  • generation
  • gpt-2
  • language-model