Learning cell communication from spatial graphs of cells
- tensorflow
- gnn
- glm
- cvae
Repository Index
65,264 visible repositories in the index
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Real-time web-based collaborative open source mind mapping
🔥🔥🔥[NeurIPS 2026] Official Implementation of DGP: Where to Connect? Boosting MLLMs via Dynamic Gated Pathways across ALL ViT and LLM Layers
- large-language-models
- multi-model
CASSIA: A Multi-Agent LLM-Based Single-Cell Cell Type Annotation Framework
- ai4science
- llm
- multiagent-systems
- prompt-engineering
Analyze, visualize, and process sound field data recorded by spherical microphone arrays.
- python
- sound
- analysis
- package
Credential gateway for AI agents. Log in once via Oauth2 or API Key. Every agent stays authenticated — headless, no SaaS, agents never see your credentials.
TranslatedLine-by-line source code analysis of Nano vLLM
Deterministic Software Engineering Governance for Multi-Agent Coding Workflows (CLI, .cursorrules, 4-Artifact Templates & 14-Chapter Guide) | 融合软件工程治理的多智能体编排框架与完全指南
- agent-orchestration
- ai-governance
- black-box-testing
- claude-code
Fault-injected tool environments with side-effect grading for evaluating and post-training LLM agents
Auto Ontology is a Python framework for building semantic, graph-based reasoning layers over data. It enables deterministic query generation, better context retrieval, and more explainable AI for LLM and agent workflows.
Nosis is a lightweight personal agent runtime: per-session execution boundaries with OS-level sandboxing, computer use, a full built-in toolset, Skill / Plugin / MCP extensions, one runtime shared by GUI and TUI, and file-persisted sessions, plans, and memory.
- agent-framework
- agent-runtime
- agent-skills
- ai-agent
An NLP library for Uralic languages such as Finnish, Skolt Sami, Moksha and so on. Also supporting some non-Uralic languages such as Spanish, French, Arabic, Swedish, Norwegian, Russian and English. LLMs, FSTs and More!
- nlp-library
- uralic-languages
- finnish
- sami
[ICML 2026] Let LLMs invent and evolve languages for efficient reasoning.
PDF extraction that audits its own output — and certifies any other extractor's, catching pages they silently dropped. Verify signed manifests offline: free, MIT, no account. 0.903 on opendataloader-bench, #2 of 8 engines. 7-tool MCP server.
Friendly Environment for Neural Networks (fenn) is a simple Python framework for building ML/DL workflows and LLM agents faster, with prebuilt trainers, agent templates, logging, configuration management, and much more.
- beginner-friendly
- beginner-project
- deep-learning
- deep-neural-networks
Real-Time Spherical Array Renderer for binaural reproduction in Python
- python
- signal-processing
- binauralaudio
- 3d-audio
Autonomous multi-agent framework to optimize scientific software
- acceleration
- agentic-ai
- ai-agents
- bioinformatics
Open standard for Provenance & Intent Contracts (PIC) in AI agents. Verify intent, provenance, and evidence before high-impact tool calls.
- action-proposals
- agentic-ai
- agents
- ai
A JupyterHub authenticator for LTI
- jupyterhub
- lms
- lti
Agentic memory for CTI in Python — STIX knowledge graphs, threat-actor alias resolution, offline-first RAG, MCP server for Claude Code and LangChain agents
- claude-code
- cti
- llm
- rag
MCP server that connects AI agents to your running Neovim instance via msgpack-RPC — no plugins required.
Outcome-based persistent memory MCP server for Claude Code and OpenCode. Good advice promoted, bad advice demoted. pip install roampal.
- ai-memory
- claude-code
- llm
- mcp
The repository host gives no description.
MCP server for spatial transcriptomics analysis through natural language interfaces.
- bioinformatics
- cell-communication
- deconvolution
- machine-learning