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841–864 of 1,817 · Most stars

In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more

  • dna
  • k-mer
  • python
  • bloom-filter

HERO = Hashing · Edge cases · Rubrics · Overbuild — the four shapes coding agents over-defend in. A paste-in contract that stops them. Works with Claude Code, Codex, Antigravity, Cursor, Copilot, Windsurf, Gemini CLI.

DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genome

  • kmer
  • dnabert-model
  • kmer-format
  • gpu

Tor2web is an HTTP proxy software that enables access to Tor Hidden Services by mean of common web browsers

This repo offers a simple interface that helps you to read&summerize research papers in pdf format. You can ask some questions after reading. This interface is developed based on openai API and using GPT-3.5-turbo model.

Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different domains of protein biology.

  • deep-learning
  • protein-sequences
  • protein-structure
  • semi-supervised-learning

Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

  • calcium-imaging
  • deconvolution
  • source-extraction
  • motion-correction

The last Micro Web Server for IoTs (MicroPython) or large servers (CPython), that supports WebSockets, routes, template engine and with really optimized architecture (mem allocations, async I/Os). Ready for ESP32, STM32 on Pyboard, Pycom's chipsets (WiPy, LoPy, ...). Robust, efficient and documented!