Repository Index

U-Net Brain Tumor Segmentation

• tensorflow
• tensorlayer
• unet
• medical-imaging

honeyλ - a simple, serverless application designed to create and monitor fake HTTP endpoints (i.e. URL honeytokens) automatically, on top of AWS Lambda and Amazon API Gateway

• honeytoken
• honeypot
• security
• deception

Suricata, Snort and Zeek IDS rule and pcap testing system

Code for the Nature Scientific Reports paper "Pathologist-level classification of histologic patterns on resected lung adenocarcinoma slides with deep neural networks." A sliding window framework for classification of high resolution whole-slide images, often microscopy or histopathology images.

• histopathology-images
• microscopy
• sliding-windows
• medical-image-analysis

A tool for semi-automatic cell type classification

• python
• single-cell
• machine-learning
• scrna-seq

A Python native dynamical system simulation framework in the block diagram paradigm.

• blockdiagram
• control-systems
• hierarchical-modeling
• nonlinear-dynamics

RNA Velocity generalized through dynamical modeling

Fast, exact inference for StartLux-Decision models on NVIDIA GPUs: the released GGUF files on int8 and 4-bit tensor cores, behind the /v1/systemone API, with up to 5.3× lower latency than vLLM in FP8 and bit-identical answers.

• calibration
• cuda
• cuda-graphs
• decision-making

Code repository for "TrackEverything: Long Horizon Dense Tracking via De-Duplicating 3D Scene Representations"

• 3d-point-tracking
• point-tracking

Malcolm is a powerful, easily deployable network traffic analysis tool suite for full packet capture artifacts (PCAP files), Zeek logs and Suricata alerts.

• network-security
• security
• arkime
• cybersecurity

RNNLG is an open source benchmark toolkit for Natural Language Generation (NLG) in spoken dialogue system application domains. It is released by Tsung-Hsien (Shawn) Wen from Cambridge Dialogue Systems Group under Apache License 2.0.

• natural-language-processing
• natural-language-generation
• nlg-dataset
• deep-learning

Build AI text detectors whose decisions are mechanistically grounded and human-auditable (EMNLP 2026)

• ai-text-detection
• explainable-ai
• interpretability
• mechanistic-interpretability

Tools for computational pathology

• machine-learning
• digital-pathology
• computational-pathology
• biomedical-image-processing

MySQL to PostgreSQL replica system

• python
• postgresql
• mysql
• mysql-replication

:hospital: Medical Text Mining and Information Extraction with spaCy

• natural-language-processing
• medical-natural-language-processing
• machine-learning
• metamap

An application for controlling 2D plotters, cutters, engravers, and CNC machines.

A 4B grounding foundation model for physical intelligence. Unifies detection, referring, pointing, OCR, GUI, and layout grounding, achieving SOTA overall across 34 benchmarks and improving robot generalization and data efficiency in controlled evaluations.

• embodied-ai
• gui-grounding
• object-detection
• ocr

RELATE is an Environment for Learning And TEaching

• web
• web-application
• course-management
• python

Android Studio / Eclipse ADT template for material-design-icons resources

Code and Pretrained Models for Interspeech 2023 Paper "Whisper-AT: Noise-Robust Automatic Speech Recognizers are Also Strong Audio Event Taggers"

• audio
• audio-classification
• audio-processing
• audio-tagging

A python package for calculating the PESQ.

Kotti is a high-level, Pythonic web application framework based on Pyramid and SQLAlchemy. It includes an extensible Content Management System called the Kotti CMS.

TranslatedOpen-source vertical micro-drama distribution platform (drama CMS + H5 + App). Short drama system / short drama distribution / short drama source code fully open, aimed at taking short dramas overseas. Also provides full-chain services for taking short dramas overseas: payment collection channels / short drama production / custom system development / ad placement. Inquiries welcome.

• micro-drama
• short-drama
• short-drama-distribution
• svod-platform

Limon is a sandbox developed as a research project written in python, which automatically collects, analyzes, and reports on the run time indicators of Linux malware. It allows one to inspect Linux malware before execution, during execution, and after execution (post-mortem analysis) by performing static, dynamic and memory analysis using open source tools