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ZetaStitcher is a tool designed to stitch large volumetric images such as those produced by Light-Sheet Fluorescence Microscopes.

  • stitching
  • microscopy
  • microscopy-images
  • fluorescence-microscopy-imaging

mrQA: tools for quality assurance in medical imaging datasets, including protocol compliance

  • qa
  • mri
  • neuroimaging
  • niqc

A python package to analyze the matrix fiber orientation and intensity around cells in fiber matrices (as a proxy for cellular forces).

  • imaging
  • microscopy
  • contractility
  • collagen

🔬Python package for high-throughput single-cell imaging analysis.

  • microscopy-image-analysis
  • single-cell-analysis