Repository Index

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• machine-learning
• gpt-2
• transformers
• natural-language-processing

High fidelity scanner for php2shell (CVE-2026-109618 and CVE-2026-109619)

Plant phenotyping with image analysis

• science
• bioinformatics
• image-analysis
• plant-phenotyping

Chapyter: ChatGPT Code Interpreter in Jupyter Notebooks

Home of the dionaea honeypot

• honeypot
• dionaea
• security

Selenium-automated Jupyter Notebook that is synchronised with Neovim in real-time.

• vim
• nvim
• nvim-plugin
• jupyter-notebook

Google maps for Jupyter notebooks

• python
• jupyter
• google-maps
• maps

YAS3FS (Yet Another S3-backed File System) is a Filesystem in Userspace (FUSE) interface to Amazon S3. It was inspired by s3fs but rewritten from scratch to implement a distributed cache synchronized by Amazon SNS notifications. A web console is provided to easily monitor the nodes of a cluster.

㊙️ Create standard barcodes with Python. No external dependencies. 100% Organic Python.

• barcode
• python
• pure-python
• svg

Skill training with a corruption and reconstruction loop: train an agent's skill library, not its weights.

BlueBERT, pre-trained on PubMed abstracts and clinical notes (MIMIC-III).

• bert
• bert-model
• natural-language-processing
• pubmed

Universal SKILL.md catalog for research workflows: literature review, research design, project memory, manuscript writing, and cross-agent delegation for Claude Code, Codex, Gemini, Cursor, OpenClaw, and generic AI clients.

• academic-writing
• ai-skills
• notebooklm
• obsidian

HTML minifier for Python frameworks (not only Django, despite the name).

• hacktoberfest

The official bitbake Git is at https://git.openembedded.org/bitbake/. Do not open issues or file pull requests here.

3-D Scientific Visualization in the Jupyter Notebook

A py.test plugin to validate Jupyter notebooks

• ipython-notebook
• jupyter-notebook
• python
• testing

Python script to import issues from one repository into another, either one at a time or all of them at once.

A simple extension for Jupyter Notebook and Jupyter Lab to beautify Python code automatically using black.

• black-formatter
• black-beautifier
• black
• jupyterlab-extension

AgML is a centralized framework for agricultural machine learning. AgML provides access to public agricultural datasets for common agricultural deep learning tasks, with standard benchmarks and pretrained models, as well the ability to generate synthetic data and annotations.

• deep-learning
• agriculture
• pytorch
• dataset

Automated Plex media cleanup with watch-based rules, smart exclusions, and "Leaving Soon" notifications via Radarr, Sonarr & Tautulli.

• overseerr
• plex
• plex-media-server
• plex-server

Pytest in IPython notebooks.

• jupyter-notebook
• pytest
• python
• ipython-notebook

Easy to use test framework for Jupyter Notebooks

• jupyter-notebooks
• unittest

A Cytoscape Jupyter widget

• cytoscape
• jupyter-notebook
• binder

Automatically add simple type annotations to your code

• mypy
• python
• typing