MCP server for spatial transcriptomics analysis through natural language interfaces.
- bioinformatics
- cell-communication
- deconvolution
- machine-learning
Repository Index
59,132 visible repositories in the index
1,489–1,512 of 1,628 · Most stars
Interactive Lisp IDE with REPL, Inspector, Debugger and more for Sublime Text 4.
- lisp
- sublime-text
- flex-completion
- repl
Tools for bulk indexing of WARC/ARC files on Hadoop, EMR or local file system.
Contrastive Explanation (Foil Trees), developed at TNO/Utrecht University
- interpretability
- machine-learning
- contrastive-explanations
- foil
Want to crack passwords faster by using a wordlist that fits your 'target audience'? Use WikiRaider.
- wordlist
- wikipedia
- dictionary
- attack
Proof Of Concept of DEcentralised Machine Learning on top of the Golem (https://golem.network/) architecture
- golem
- decentralised-machine-learning
- federated-learning
MIDI file parser for Micropython, CircuitPython and Python
Replace the built-in frames in the Game Boy Camera rom with your own!
A Python application to filter and transfer Zeek logs to Elastic/OpenSearch+Humio. This app can also output pure JSON logs to stdout for further processing!
- elasticsearch
- zeek
- opensearch
- python
Cryptographic Dataset Generation & Modelling Framework
💬 Trace citation chains for any concept across research papers and render them as an interactive graph.
- academic-research
- bibliography
- citation-graph
- cli
A foundation model-driven whole slide image-scale cell phenotyping method with QuPath integration Resources
- bioimage-analysis
- cell-classification
- computer-vision
- digital-pathology
Practical security policy enforcement for Android apps via bytecode rewriting and in-place reference monitor
lightweight GUI package manager + update notifier (with full AUR support) for Arch Linux, originally by Bob Henry Pirkle
- arch-linux
- aur
- gtk3
A tool designed for consistent and safe capture of off network web resources.
- network-defense
- security-tools
Turn CSV, Excel, and read-only databases into verified, editable business reports.
- data-visualization
- self-hosted
- sql
- text-to-sql
Wagtail Meta Preview provides panels for previewing Facebook sharing, Twitter sharing and Google search results in the Wagtail admin.
- wagtail
- share
- meta
- preview
Multi-stage Riemannian flow matching for physically valid molecular docking, with GNINA scoring, PoseBusters filtering, CLI inference, and benchmarks.
- alphafold3
- docking
- drug-design
- drug-discovery
The Scenario Architect provides a lightweight graphical user interface that allows a straightforward realization and manipulation of concrete driving testing scenarios. Exemplary usecases are the validation of an online verification framework or training of an prediction algorithm.
- safety
- scenario
This repository contains the official PyTorch implementation of GeoDA algorithm. GeoDA is a Black-box attack to generate adversarial example for image classifiers.
A module for importing page content into Wagtail from third-party sources. Docs:
A little logger for machine learning research
Claude Code marketplace for multi-agent collaboration — task splitter, output reconciler, adversarial debate, shared memory, acceptance gate. Composes with codex-delegate / gemini-delegate.
- agent-collaboration
- ai-agents
- claude-code
- claude-skills
Create self-extracting compressed or self-mounting archives for MicroPython