Repository Index

Simple High Interaction Honeypot Solution for SMB protocol

• honeypot
• smb

A Python type checker

Pure Python library for reading NIS Elements ND2 images and metadata

• nd2
• pims
• nikon
• nis-elements

Some scripts to help construct small reproducing examples of bugs, implement [Proof using], etc.

ZetaStitcher is a tool designed to stitch large volumetric images such as those produced by Light-Sheet Fluorescence Microscopes.

• stitching
• microscopy
• microscopy-images
• fluorescence-microscopy-imaging

ROS QGIS Plugin prototype

A Cross-Platform, Open Silhouette Portrait Cutter/Plotter Driver

💬 Trace citation chains for any concept across research papers and render them as an interactive graph.

• academic-research
• bibliography
• citation-graph
• cli

A foundation model-driven whole slide image-scale cell phenotyping method with QuPath integration Resources

• bioimage-analysis
• cell-classification
• computer-vision
• digital-pathology

HistoClean is a tool for the preprocessing and augmentation of images used in deep learning models. This easy to use application brings together the most popular image processing packages from across the python universe, meaning no more looking at documentation! HistoClean provides real time feedback to augmentations and preprocessing options. This allows users to evaluate their steps before implementation.

• image-processing
• images
• image-analysis
• deep-learning

OpenRAVE Controller Plugin for UR5 (Universal Robots UR5) Robot

• ur5
• robotics
• openrave
• plugin

A versatile single-cell cross-modality translation method via dual-aligned variational autoencoders

Dual Quaternion conversions from/to ROS messages

Lattice light-sheet post-processing utility.

• microscopy
• light-sheet
• image-processing
• image-analysis

Noise Correction Algorithm for sCMOS cameras

• cmos
• imaging
• noise
• readout

Single-cell fluorescence microscopy data analysis

• microscopy
• fluorescence-microscopy-imaging

An interactive image processing program for biologists written in Python.

• biologists
• python
• imagej
• calcium

Accurate segmentation of bacterial microscope images using deep learning synthetically generated image data.

• microscopy
• image-processing
• segmentation
• biology

This script is written in python 3.x for interfacing the AD9833 with microcontrollers with micropython (specifically the PyBoard) over SPI.

• micropython
• micropython-board
• pyboard
• spi

Pythonic way of keeping secrets secure in JSON

• secret-management
• secret-in-json
• json-parser
• python

mrQA: tools for quality assurance in medical imaging datasets, including protocol compliance

• qa
• mri
• neuroimaging
• niqc

A mini SDI-12 implementation for getting sensor info over RS-485

• micropython
• sdi-12
• sensor
• pycom

🛡️ Static security scanner (SAST) for Ansible playbooks, roles, and collections. 1,000+ rules across 30+ categories detecting malicious code, RCE, hardcoded credentials, and supply-chain risk. Outputs SARIF, CycloneDX SBOM, and GitLab SAST. SLSA Build Level 3, Sigstore-signed.

• ansible
• ansible-playbook
• devsecops
• infrastructure-as-code

A python package to analyze the matrix fiber orientation and intensity around cells in fiber matrices (as a proxy for cellular forces).

• imaging
• microscopy
• contractility
• collagen