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2,353–2,376 of 5,590 · Most stars

In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more

  • dna
  • k-mer
  • python
  • bloom-filter

HERO = Hashing · Edge cases · Rubrics · Overbuild — the four shapes coding agents over-defend in. A paste-in contract that stops them. Works with Claude Code, Codex, Antigravity, Cursor, Copilot, Windsurf, Gemini CLI.

DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genome

  • kmer
  • dnabert-model
  • kmer-format
  • gpu