Repository Index

Python Imaging Library (fork)

• c
• cross-platform
• pil
• pillow

Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

• calcium-imaging
• deconvolution
• source-extraction
• motion-correction

cell detection in calcium imaging recordings

• imaging
• neuroscience
• data-analysis

An open-source imaging workbench for making and studying SDR and HDR images from sensor data

ZetaStitcher is a tool designed to stitch large volumetric images such as those produced by Light-Sheet Fluorescence Microscopes.

• stitching
• microscopy
• microscopy-images
• fluorescence-microscopy-imaging

Noise Correction Algorithm for sCMOS cameras

• cmos
• imaging
• noise
• readout

A python package to analyze the matrix fiber orientation and intensity around cells in fiber matrices (as a proxy for cellular forces).

• imaging
• microscopy
• contractility
• collagen

🔬Python package for high-throughput single-cell imaging analysis.

• microscopy-image-analysis
• single-cell-analysis