Repository Index

3D visualization and mesh analysis for science and engineering

• vtk
• python
• visualization
• 3d

PyGraphistry is a Python library to quickly load, shape, embed, and explore big graphs with the GPU-accelerated Graphistry visual graph analyzer

• graph
• visualization
• gpu
• graphistry

A python module for scientific analysis of 3D data based on VTK and Numpy

• 3d-graphics
• vtk
• 3d
• mesh

Automated 3D cell detection in very large images

• microscopy
• cell-detection
• deep-learning
• image-analysis

A tool for cell instance aware segmentation in densely packed 3D volumetric images

• segmentation
• deep-learning
• bioinformatics
• neural-network

Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy

• biology
• fluorescence
• image-analysis
• image-processing

HistoClean is a tool for the preprocessing and augmentation of images used in deep learning models. This easy to use application brings together the most popular image processing packages from across the python universe, meaning no more looking at documentation! HistoClean provides real time feedback to augmentations and preprocessing options. This allows users to evaluate their steps before implementation.

• image-processing
• images
• image-analysis
• deep-learning

3D shape analysis using deep learning

• cancer-biology
• cell-biology
• deep-learning
• geometric-deep-learning

Lattice light-sheet post-processing utility.

• microscopy
• light-sheet
• image-processing
• image-analysis