Repository Index

Data Apps & Dashboards for Python. No JavaScript Required.

• dash
• plotly
• data-visualization
• data-science

Official git repository for Biopython (originally converted from CVS)

• python
• bioinformatics
• genomics
• biopython

Cloud-native genomic dataframes and batch computing

• genetics
• vcf
• genomics
• gwas

In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more

• dna
• k-mer
• python
• bloom-filter

A dependency-free cross-platform swiss army knife for PDB files.

• python
• protein
• pdb
• bioinformatics

Autonomous multi-agent framework to optimize scientific software

• acceleration
• agentic-ai
• ai-agents
• bioinformatics

MCP server for spatial transcriptomics analysis through natural language interfaces.

• bioinformatics
• cell-communication
• deconvolution
• machine-learning

Fast, deterministic cell-type deconvolution for million-bin spatial transcriptomics

• bioinformatics
• cell-type-deconvolution
• computational-biology
• deconvolution