Biomni: a general-purpose biomedical AI agent
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Bioinformatics'2020: BioBERT: a pre-trained biomedical language representation model for biomedical text mining
A full spaCy pipeline and models for scientific/biomedical documents.
- scientific-documents
- spacy
- custom-pipes
- nlp
Tools for computational pathology
- machine-learning
- digital-pathology
- computational-pathology
- biomedical-image-processing
PyTorch Connectomics: segmentation toolbox for EM connectomics
- computer-vision
- neuroscience
- connectomics
- pytorch
MOGONET (Multi-Omics Graph cOnvolutional NETworks) is a novel multi-omics data integrative analysis framework for classification tasks in biomedical applications.
Read and write Neuroglancer datasets programmatically.
- neuroglancer
- volumetric-data
- python
- cloud
OpenBioLink is a resource and evaluation framework for evaluating link prediction models on heterogeneous biomedical graph data.
TypeDB Bio: Biomedical Knowledge Graph
- bioinformatics
- knowledge-graph
- knowledge-base
- drug-discovery
🧙 meiga is a Python µframework that provides a simple, fully typed, monad-based result type ➡️ Result[Value, Error].
- monads
- result-type
- typing
- python
A framework for keeping biomedical text mining result up-to-date
- bionlp
- text-mining
- infrastructure
- python