Open source code for AlphaFold 2.
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Efficiently computes derivatives of NumPy code.
- autograd
- automatic-differentiation
- numpy
- python
Code for running RFdiffusion
Source code of PyGAD, a Python 3 library for building the genetic algorithm and training machine learning algorithms (Keras & PyTorch).
- python
- genetic-algorithm
- optimization
- numpy
Deep probabilistic analysis of single-cell and spatial omics data
- scrna-seq
- variational-bayes
- variational-autoencoder
- cite-seq
Spearmint Bayesian optimization codebase
Brian is a free, open source simulator for spiking neural networks.
- python
- neuroscience
- science
- differential-equations
WeeWX code repository
- weather
- python
- weewx
- raspberry-pi
DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genome
- kmer
- dnabert-model
- kmer-format
- gpu
OmegaFold Release Code
Junction Tree Variational Autoencoder for Molecular Graph Generation (ICML 2018)
Source code of the Theoretical Physics Reference online book
An automatic code generator for nonlinear model predictive control (NMPC) and the continuation/GMRES method (C/GMRES) based numerical solvers for NMPC
- model-predictive-control
- nonlinear-model-predictive-control
- mpc
- nmpc
Autonomous multi-agent framework to optimize scientific software
- acceleration
- agentic-ai
- ai-agents
- bioinformatics
Local OpenAlex database with 284M+ works, abstracts, and semantic search
- academic
- literature-review
- openalex
- python
A browser workspace connecting research projects, apps, and collaborators