67,262 visible repositories in the index
1–15 of 15 · Most stars
Eclipse SUMO is an open source, highly portable, microscopic and continuous traffic simulation package designed to handle large networks. It allows for intermodal simulation including pedestrians and comes with a large set of tools for scenario creation.
Code for the Nature Scientific Reports paper "Pathologist-level classification of histologic patterns on resected lung adenocarcinoma slides with deep neural networks." A sliding window framework for classification of high resolution whole-slide images, often microscopy or histopathology images.
Tools for computational pathology
Image restoration for fluorescence microscopy
Automated 3D cell detection in very large images
A Python interface to access neuroanatomical atlases
Automated 3D brain registration with support for multiple species and atlases.
Accurate and efficient spot detection for microscopy data
Python package for image-based profiling
Axon/Myelin segmentation using Deep Learning
python functions for simulating optical transfer functions
A foundation model-driven whole slide image-scale cell phenotyping method with QuPath integration Resources
Single-cell fluorescence microscopy data analysis
Accurate segmentation of bacterial microscope images using deep learning synthetically generated image data.
Python library for statistical analysis of mRNA and protein distributions in fluorescent microscopy images