Repository Index

TransformerCPI: Improving compound–protein interaction prediction by sequence-based deep learning with self-attention mechanism and label reversal experiments(BIOINFORMATICS 2020) https://doi.org/10.1093/bioinformatics/btaa524

• self-attention
• compound-protein-interaction
• transformercpi
• structure-free-virtual-sreening

MCP server for spatial transcriptomics analysis through natural language interfaces.

• bioinformatics
• cell-communication
• deconvolution
• machine-learning

💬 Trace citation chains for any concept across research papers and render them as an interactive graph.

• academic-research
• bibliography
• citation-graph
• cli

Local CrossRef database with 167M+ works and full-text search

• abstract
• citation
• impact-factor
• localhost

Local OpenAlex database with 284M+ works, abstracts, and semantic search

• academic
• literature-review
• openalex
• python

A browser workspace connecting research projects, apps, and collaborators

• cli
• django
• docker
• python