Tools for computational pathology
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Image restoration for fluorescence microscopy
Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy
ZetaStitcher is a tool designed to stitch large volumetric images such as those produced by Light-Sheet Fluorescence Microscopes.
Single-cell fluorescence microscopy data analysis
An interactive image processing program for biologists written in Python.
Python library for statistical analysis of mRNA and protein distributions in fluorescent microscopy images