Composable transformations of Python+NumPy programs: differentiate, vectorize, JIT to GPU/TPU, and more
Repository Index
47,133 repositories indexed
1–24 of 29 · Most stars
Official git repository for Biopython (originally converted from CVS)
- python
- bioinformatics
- genomics
- biopython
Python framework for creating, editing, and running Noisy Intermediate-Scale Quantum (NISQ) circuits.
- nisq
- quantum-algorithms
- quantum-computing
- cirq
Accelerated deep learning R&D
:spider_web: input/output for many mesh formats
- vtk
- pypi
- python
- mesh
Bioinformatics'2020: BioBERT: a pre-trained biomedical language representation model for biomedical text mining
QuTiP: Quantum Toolbox in Python
- qutip
- python
- quantum-toolbox
- quantum
A full spaCy pipeline and models for scientific/biomedical documents.
- scientific-documents
- spacy
- custom-pipes
- nlp
🦖 ClawBio - The first bioinformatics-native AI agent skill library. Local-first. Reproducible. Open. Free.
An information security preparedness tool to do adversarial simulation.
- uber
- vagrant
- yaml
- celery
Cloud-native genomic dataframes and batch computing
- genetics
- vcf
- genomics
- gwas
Plant phenotyping with image analysis
- science
- bioinformatics
- image-analysis
- plant-phenotyping
Python package for graph neural networks in chemistry and biology
- deep-learning
- graph-neural-networks
- dgl
- cheminformatics
In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more
- dna
- k-mer
- python
- bloom-filter
Interactive network visualization in Python and Dash, powered by Cytoscape.js
- plotly-dash
- plotly
- dash
- cytoscape
Molecular Processing Made Easy.
- python
- molecule
- rdkit
- drug-discovery
Graph-linked unified embedding for single-cell multi-omics data integration
- bioinformatics
- deep-learning
- single-cell
- single-cell-multiomics
A dependency-free cross-platform swiss army knife for PDB files.
- python
- protein
- pdb
- bioinformatics
Quantum Computer Library for Everyone
- quantum
- python
- quantum-computing
- quantum-algorithms
Molecule Validation and Standardization
- rdkit
- python
- chemistry
- cheminformatics
ChemML is a machine learning and informatics program suite for the chemical and materials sciences.
- quantum-mechanics
- materials-informatics
- data-science
- machine-learning
TransformerCPI: Improving compound–protein interaction prediction by sequence-based deep learning with self-attention mechanism and label reversal experiments(BIOINFORMATICS 2020) https://doi.org/10.1093/bioinformatics/btaa524
- self-attention
- compound-protein-interaction
- transformercpi
- structure-free-virtual-sreening
A tool for cell instance aware segmentation in densely packed 3D volumetric images
- segmentation
- deep-learning
- bioinformatics
- neural-network
CASSIA: A Multi-Agent LLM-Based Single-Cell Cell Type Annotation Framework
- ai4science
- llm
- multiagent-systems
- prompt-engineering