Python Toolkit for Causal and Probabilistic Reasoning
- python
- bayesian-networks
- causal-inference
- causal-discovery
Repository Index
47,133 repositories indexed
1–22 of 22 · Most stars
Cartopy - a cartographic python library with matplotlib support
- cartopy
- matplotlib
- python
- geometry
Python interface for igraph
- complex-networks
- graph-algorithms
- graph-theory
- mathematics
Python package for graph neural networks in chemistry and biology
- deep-learning
- graph-neural-networks
- dgl
- cheminformatics
In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more
- dna
- k-mer
- python
- bloom-filter
A PyTorch and TorchDrug based deep learning library for drug pair scoring. (KDD 2022)
- deep-learning
- pytorch
- deep-chemistry
- graph-neural-network
OpenChem: Deep Learning toolkit for Computational Chemistry and Drug Design Research
Chainer Chemistry: A Library for Deep Learning in Biology and Chemistry
Interactive network visualization in Python and Dash, powered by Cytoscape.js
- plotly-dash
- plotly
- dash
- cytoscape
Junction Tree Variational Autoencoder for Molecular Graph Generation (ICML 2018)
Graph-linked unified embedding for single-cell multi-omics data integration
- bioinformatics
- deep-learning
- single-cell
- single-cell-multiomics
This is a Pytorch implementation of the paper: Self-Supervised Graph Transformer on Large-Scale Molecular Data
FOREST is a research agent for long-horizon science, where evidence gets lost, errors compound, and goals drift. It explores ideas, reads literature, forms hypotheses, runs real experiments, analyzes results, revises paths, and builds a full paper—all in an editable graph you can inspect, branch, redirect, with claims and figures linked to evidence
- ai-agents
- ai-scientist
- automated-research
- autoresearch
MOGONET (Multi-Omics Graph cOnvolutional NETworks) is a novel multi-omics data integrative analysis framework for classification tasks in biomedical applications.
TypeDB Bio: Biomedical Knowledge Graph
- bioinformatics
- knowledge-graph
- knowledge-base
- drug-discovery
NeoDTI: Neural integration of neighbor information from a heterogeneous network for discovering new drug-target interactions
- computational-biology
- bioinformatics
- graph-convolution
- deep-learning
Cryptographic Dataset Generation & Modelling Framework
💬 Trace citation chains for any concept across research papers and render them as an interactive graph.
- academic-research
- bibliography
- citation-graph
- cli
Python Frontend to Algorithms of the Algorithm Engineering Group Heidelberg
- combinatorial-optimization
- community-detection
- dynamic-graphs
- edge-orientation
Nova DSO Tracker is an open-source Flask application for astrophotographers, providing real-time tracking of deep-sky objects' altitude, observability prediction, and integration with Stellarium and SIMBAD databases.
Local CrossRef database with 167M+ works and full-text search
- abstract
- citation
- impact-factor
- localhost
Local OpenAlex database with 284M+ works, abstracts, and semantic search
- academic
- literature-review
- openalex
- python